PMC Links for GEO Profiles (Select 87146223) - PMC

Select item 99681651.

In Silico Examination of Single Nucleotide Missense Mutations in NHLH2, a Gene Linked to Infertility and Obesity

Allison T. Madsen, Deborah J. Good

Int J Mol Sci. 2023 Feb; 24(4): 3193. Published online 2023 Feb 6. doi: 10.3390/ijms24043193

PMCID:: PMC9968165

Select item 88421652.

CFTR interactome mapping using the mammalian membrane two‐hybrid high‐throughput screening system

Sang Hyun Lim, Jamie Snider, Liron Birimberg‐Schwartz, Wan Ip, Joana C Serralha, Hugo M Botelho, Miquéias Lopes‐Pacheco, Madalena C Pinto, Mohamed Taha Moutaoufik, Mara Zilocchi, Onofrio Laselva, Mohsen Esmaeili, Max Kotlyar, Anna Lyakisheva, Priscilla Tang, Lucía López Vázquez, Indira Akula, Farzaneh Aboualizadeh, Victoria Wong, Ingrid Grozavu, Teuta Opacak‐Bernardi, Zhong Yao, Meg Mendoza, Mohan Babu, Igor Jurisica, Tanja Gonska, Christine E Bear, Margarida D Amaral, Igor Stagljar

Mol Syst Biol. 2022 Feb; 18(2): e10629. Published online 2022 Feb 14. doi: 10.15252/msb.202110629

PMCID:: PMC8842165

Abstract Article PDF–3.0M

Select item 81650303.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 80090484.

Impact of cytosine methylation on DNA binding specificities of human transcription factors

Yimeng Yin, Ekaterina Morgunova, Arttu Jolma, Eevi Kaasinen, Biswajyoti Sahu, Syed Khund-Sayeed, Pratyush K. Das, Teemu Kivioja, Kashyap Dave, Fan Zhong, Kazuhiro R. Nitta, Minna Taipale, Alexander Popov, Paul A. Ginno, Silvia Domcke, Jian Yan, Dirk Schübeler, Charles Vinson, Jussi Taipale

Science. Author manuscript; available in PMC 2021 Mar 30.

Published in final edited form as: Science. 2017 May 5; 356(6337): eaaj2239. doi: 10.1126/science.aaj2239

PMCID:: PMC8009048

Abstract Article PDF–2.6M

Select item 71699835.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 39849146.

Leptin Signaling Regulates Hypothalamic Expression of Nescient helix-loop-helix 2 (Nhlh2) Through Signal Transducer and Activator 3 (Stat3)

Numan AL Rayyan, Jinhua Zhang, Amy S. Burnside, Deborah J. Good

Mol Cell Endocrinol. Author manuscript; available in PMC 2015 Mar 25.

Published in final edited form as: Mol Cell Endocrinol. 2014 Mar 25; 384(0): 134–142. Published online 2014 Jan 29. doi: 10.1016/j.mce.2014.01.017

PMCID:: PMC3984914

Abstract Article PDF–1.1M

Select item 35058917.

Two Single Nucleotide Polymorphisms in the Human Nescient Helix Loop Helix 2 (NHLH2) Gene Reduce mRNA Stability and DNA Binding

Numan AL_Rayyan, Umesh Wankhade, Korie Bush, Deborah J. Good

Gene. Author manuscript; available in PMC 2014 Jan 1.

Published in final edited form as: Gene. 2013 Jan 1; 512(1): 134–142. Published online 2012 Sep 28. doi: 10.1016/j.gene.2012.09.068

PMCID:: PMC3505891

Abstract Article PDF–4.2M

Select item 34436388.

SIRT1 Activates MAO-A in the Brain to Mediate Anxiety and Exploratory Drive

Sergiy Libert, Kelli Pointer, Eric L. Bell, Abhirup Das, Dena E. Cohen, John M. Asara, Karen Kapur, Sven Bergmann, Martin Preisig, Takeshi Otowa, Kenneth S. Kendler, Xiangning Chen, John M. Hettema, Edwin J. van den Oord, Justin P. Rubio, Leonard Guarente

Cell. Author manuscript; available in PMC 2012 Dec 23.

Published in final edited form as: Cell. 2011 Dec 23; 147(7): 1459–1472. Published online 2011 Dec 8. doi: 10.1016/j.cell.2011.10.054

PMCID:: PMC3443638

Abstract Article PDF–3.0M

Select item 33472349.

Biochemical and Phosphoproteomic Analysis of the Helix-Loop-Helix Protein E47

Robert Teachenor, Kristina Beck, Lilyan Y. T. Wright, Zhouxin Shen, Steven P. Briggs, Cornelis Murre

Mol Cell Biol. 2012 May; 32(9): 1671–1682. doi: 10.1128/MCB.06452-11

PMCID:: PMC3347234

Abstract Article PDF–2.0M

Select item 317805910.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 314288711.

Genetic variants at CD28, PRDM1, and CD2/CD58 are associated with rheumatoid arthritis risk

Soumya Raychaudhuri, Brian P. Thomson, Elaine F. Remmers, Stephen Eyre, Anne Hinks, Candace Guiducci, Joseph J. Catanese, Gang Xie, Eli A. Stahl, Robert Chen, Lars Alfredsson, Christopher I. Amos, Kristin G. Ardlie, BIRAC Consortium, Anne Barton, John Bowes, Noel P. Burtt, Monica Chang, Jonathan Coblyn, Karen H. Costenbader, Lindsey A. Criswell, J. Bart A. Crusius, Jing Cui, Phillip L. De Jager, Bo Ding, Paul Emery, Edward Flynn, Pille Harrison, Lynne J. Hocking, Tom W. J. Huizinga, Daniel L. Kastner, Xiayi Ke, Fina A. S. Kurreeman, Annette T. Lee, Xiangdong Liu, Yonghong Li, Paul Martin, Ann W. Morgan, Leonid Padyukov, David M. Reid, Mark Seielstad, Michael F. Seldin, Nancy A. Shadick, Sophia Steer, Paul P. Tak, Wendy Thomson, Annette H. M. van der Helm-van Mil, Irene E. van der Horst-Bruinsma, Michael E. Weinblatt, Anthony G. Wilson, Gert Jan Wolbink, Paul Wordsworth, YEAR Consortium, David Altshuler, Elizabeth W. Karlson, Rene E. M. Toes, Niek de Vries, Ann B. Begovich, Katherine A. Siminovitch, Jane Worthington, Lars Klareskog, Peter K. Gregersen, Mark J. Daly, Robert M. Plenge

Nat Genet. Author manuscript; available in PMC 2011 Jul 25.

Published in final edited form as: Nat Genet. 2009 Dec; 41(12): 1313–1318. Published online 2009 Nov 8. doi: 10.1038/ng.479

PMCID:: PMC3142887

Abstract Article PDF–751K

Select item 308866612.

Oncogenic LMO3 Collaborates with HEN2 to Enhance Neuroblastoma Cell Growth through Transactivation of Mash1

Eriko Isogai, Miki Ohira, Toshinori Ozaki, Shigeyuki Oba, Yohko Nakamura, Akira Nakagawara

PLoS One. 2011; 6(5): e19297. Published online 2011 May 5. doi: 10.1371/journal.pone.0019297

PMCID:: PMC3088666

Abstract Article PDF–666K

Select item 270726313.

Nhlh2: A Basic Helix-Loop-Helix Transcription Factor Controlling Physical Activity

Deborah J. Good, Christopher A. Coyle, Dana L. Fox

Exerc Sport Sci Rev. Author manuscript; available in PMC 2009 Oct 1.

Published in final edited form as: Exerc Sport Sci Rev. 2008 Oct; 36(4): 187–192. doi: 10.1097/JES.0b013e31818782dd

PMCID:: PMC2707263

Article PDF–305K

Select item 135612914.

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes

Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano

Genome Res. 2006 Jan; 16(1): 55–65. doi: 10.1101/gr.4039406