PMC Links for GEO Profiles (Select 87602166) - PMC

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Items: 18

Select item 54545331.

Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification

Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck

Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473

PMCID:: PMC5454533

Abstract Article PDF–1.5M

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 32853553.

YajL, Prokaryotic Homolog of Parkinsonism-associated Protein DJ-1, Functions as a Covalent Chaperone for Thiol Proteome

Hai-Tuong Le, Valérie Gautier, Fatoum Kthiri, Abderrahim Malki, Nadia Messaoudi, Mouadh Mihoub, Ahmed Landoulsi, Young Jun An, Sun-Shin Cha, Gilbert Richarme

J Biol Chem. 2012 Feb 17; 287(8): 5861–5870. Published online 2011 Dec 7. doi: 10.1074/jbc.M111.299198

PMCID:: PMC3285355

Abstract Article PDF–1.2M

Select item 31054254.

Two forms of ribosomal protein L2 of Escherichia coli that inhibit DnaA in DNA replication

Sundari Chodavarapu, Magdalena M. Felczak, Jon M. Kaguni

Nucleic Acids Res. 2011 May; 39(10): 4180–4191. Published online 2011 Feb 2. doi: 10.1093/nar/gkq1203

PMCID:: PMC3105425

Abstract Article PDF–1.4M

Select item 29192095.

Structures of the ribosome in intermediate states of ratcheting

Wen Zhang, Jack Dunkle, Jamie H. D. Cate

Science. Author manuscript; available in PMC 2010 Aug 10.

Published in final edited form as: Science. 2009 Aug 21; 325(5943): 1014–1017. doi: 10.1126/science.1175275

PMCID:: PMC2919209

Abstract Article PDF–2.2M

Select item 28380616.

The Ribosomal Protein L2 Interacts with the RNA Polymerase α Subunit and Acts as a Transcription Modulator in Escherichia coli

Valentina Rippa, Claudia Cirulli, Benedetta Di Palo, Nunzianna Doti, Angela Amoresano, Angela Duilio

J Bacteriol. 2010 Apr; 192(7): 1882–1889. Published online 2010 Jan 22. doi: 10.1128/JB.01503-09

PMCID:: PMC2838061

Abstract Article PDF–900K

Select item 27786117.

Regulation of the protein-conducting channel by a bound ribosome

James Gumbart, Leonardo G. Trabuco, Eduard Schreiner, Elizabeth Villa, Klaus Schulten

Structure. Author manuscript; available in PMC 2010 Nov 11.

Published in final edited form as: Structure. 2009 Nov 11; 17(11): 1453–1464. doi: 10.1016/j.str.2009.09.010

PMCID:: PMC2778611

Abstract Article PDF–3.1M

Select item 22921778.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 19194959.

Functional genetic selection of Helix 66 in Escherichia coli 23S rRNA identified the eukaryotic-binding sequence for ribosomal protein L2

Kei Kitahara, Akimasa Kajiura, Neuza Satomi Sato, Tsutomu Suzuki

Nucleic Acids Res. 2007 Jun; 35(12): 4018–4029. Published online 2007 Jun 6. doi: 10.1093/nar/gkm356

PMCID:: PMC1919495

Abstract Article PDF–1.9M

Select item 168148210.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148111.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 145705212.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 132520013.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 121965814.

Precise determination of RNA-protein contact sites in the 50 S ribosomal subunit of Escherichia coli.

B Thiede, H Urlaub, H Neubauer, G Grelle, B Wittmann-Liebold

Biochem J. 1998 Aug 15; 334(Pt 1): 39–42. doi: 10.1042/bj3340039

PMCID:: PMC1219658

Summary PDF–328K

Select item 121937115.

Functional implications of ribosomal protein L2 in protein biosynthesis as shown by in vivo replacement studies.

M Uhlein, W Weglöhner, H Urlaub, B Wittmann-Liebold

Biochem J. 1998 Apr 15; 331(Pt 2): 423–430. doi: 10.1042/bj3310423

PMCID:: PMC1219371

Summary PDF–475K

Select item 45486116.

The binding site for ribosomal protein L2 within 23S ribosomal RNA of Escherichia coli.

A A Beauclerk, E Cundliffe

EMBO J. 1988 Nov; 7(11): 3589–3594. doi: 10.1002/j.1460-2075.1988.tb03236.x

PMCID:: PMC454861

Summary Page Browse PDF–1.2M

Select item 32180317.

Structure of the Escherichia coli S10 ribosomal protein operon.

G Zurawski, S M Zurawski

Nucleic Acids Res. 1985 Jun 25; 13(12): 4521–4526. doi: 10.1093/nar/13.12.4521

PMCID:: PMC321803

Summary Page Browse PDF–538K

Select item 30210918.

Ribosomal protein L2 is involved in the association of the ribosomal subunits, tRNA binding to A and P sites and peptidyl transfer

Gundo Diedrich, Christian M.T. Spahn, Ulrich Stelzl, Markus A. Schäfer, Tammy Wooten, Dmitry E. Bochkariov, Barry S. Cooperman, Robert R. Traut, Knud H. Nierhaus

EMBO J. 2000 Oct 2; 19(19): 5241–5250. doi: 10.1093/emboj/19.19.5241