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Items: 1 to 20 of 68

1.
Tracking Escherichia coli DNA polymerase V to the entire genome during the SOS response
Mahmood Faraz, Roger Woodgate, Anders R. Clausen
DNA Repair (Amst) Author manuscript; available in PMC 2021 Jul 17.
Published in final edited form as: DNA Repair (Amst). 2021 May; 101: 103075. Published online 2021 Feb 19. doi: 10.1016/j.dnarep.2021.103075
PMCID:
PMC8286053
AbstractArticlePDF–866K
2.
A Comprehensive View of Translesion Synthesis in Escherichia coli
Shingo Fujii, Robert P. Fuchs
Microbiol Mol Biol Rev. 2020 Sep; 84(3): e00002-20. Published online 2020 Jun 17. doi: 10.1128/MMBR.00002-20
PMCID:
PMC7307797
AbstractArticlePDF–2.0M
3.
New insights into the structures and interactions of bacterial Y-family DNA polymerases
Kęstutis Timinskas, Česlovas Venclovas
Nucleic Acids Res. 2019 May 21; 47(9): 4393–4405. Published online 2019 Mar 27. doi: 10.1093/nar/gkz198
PMCID:
PMC6511836
AbstractArticlePDF–4.8M
4.
Conformational regulation of Escherichia coli DNA polymerase V by RecA and ATP
Malgorzata M. Jaszczur, Dan D. Vo, Ramunas Stanciauskas, Jeffrey G. Bertram, Adhirath Sikand, Michael M. Cox, Roger Woodgate, Chi H. Mak, Fabien Pinaud, Myron F. Goodman
PLoS Genet. 2019 Feb; 15(2): e1007956. Published online 2019 Feb 4. doi: 10.1371/journal.pgen.1007956
PMCID:
PMC6375631
AbstractArticlePDF–4.5M
5.
Regulation of Mutagenic DNA Polymerase V Activation in Space and Time
Andrew Robinson, John P. McDonald, Victor E. A. Caldas, Meghna Patel, Elizabeth A. Wood, Christiaan M. Punter, Harshad Ghodke, Michael M. Cox, Roger Woodgate, Myron F. Goodman, Antoine M. van Oijen
PLoS Genet. 2015 Aug; 11(8): e1005482. Published online 2015 Aug 28. doi: 10.1371/journal.pgen.1005482
PMCID:
PMC4552617
AbstractArticlePDF–16M
6.
A RecA Protein Surface Required for Activation of DNA Polymerase V
Angela J. Gruber, Aysen L. Erdem, Grzegorz Sabat, Kiyonobu Karata, Malgorzata M. Jaszczur, Dan D. Vo, Tayla M. Olsen, Roger Woodgate, Myron F. Goodman, Michael M. Cox
PLoS Genet. 2015 Mar; 11(3): e1005066. Published online 2015 Mar 26. doi: 10.1371/journal.pgen.1005066
PMCID:
PMC4374754
AbstractArticlePDF–3.2M
7.
DNA polymerase V activity is autoregulated by a novel intrinsic DNA-dependent ATPase
Aysen L Erdem, Malgorzata Jaszczur, Jeffrey G Bertram, Roger Woodgate, Michael M Cox, Myron F Goodman
eLife. 2014; 3: e02384. Published online 2014 Apr 24. doi: 10.7554/eLife.02384
PMCID:
PMC4001326
AbstractArticlePDF–1.5M
8.
The UmuC subunit of the E. coli DNA polymerase V shows a unique interaction with the β-clamp processivity factor
Atif A Patoli, Jody A Winter, Karen A Bunting
BMC Struct Biol. 2013; 13: 12. Published online 2013 Jul 4. doi: 10.1186/1472-6807-13-12
PMCID:
PMC3716654
AbstractArticlePDF–1.6M
9.
Escherichia coli UmuC active site mutants: effects on translesion DNA synthesis, mutagenesis and cell survival
Wojciech Kuban, Alexandra Vaisman, John P. McDonald, Kiyonobu Karata, Wei Yang, Myron F. Goodman, Roger Woodgate
DNA Repair (Amst) Author manuscript; available in PMC 2013 Sep 1.
Published in final edited form as: DNA Repair (Amst). 2012 Sep 1; 11(9): 726–732. Published online 2012 Jul 10. doi: 10.1016/j.dnarep.2012.06.005
PMCID:
PMC3419331
AbstractArticlePDF–3.1M
10.
Critical amino acids in Escherichia coli UmuC responsible for sugar discrimination and base-substitution fidelity
Alexandra Vaisman, Wojciech Kuban, John P. McDonald, Kiyonobu Karata, Wei Yang, Myron F. Goodman, Roger Woodgate
Nucleic Acids Res. 2012 Jul; 40(13): 6144–6157. Published online 2012 Mar 15. doi: 10.1093/nar/gks233
PMCID:
PMC3401427
AbstractArticlePDF–8.3M
11.
Proteolysis in the SOS response and metal homeostasis in Escherichia coli
Mihaela Pruteanu, Tania A. Baker
Res Microbiol. Author manuscript; available in PMC 2010 Nov 1.
Published in final edited form as: Res Microbiol. 2009 Nov; 160(9): 677–683. Published online 2009 Sep 10. doi: 10.1016/j.resmic.2009.08.012
PMCID:
PMC2783568
AbstractArticlePDF–341K
12.
Amino Acid Architecture That Influences dNTP Insertion Efficiency in Y-Family DNA Polymerase V of E. coli
Kwang Young Seo, Jun Yin, Prashant Donthamsetti, Sushil Chandani, Chui Hong Lee, Edward L. Loechler
J Mol Biol. Author manuscript; available in PMC 2010 Sep 18.
Published in final edited form as: J Mol Biol. 2009 Sep 18; 392(2): 270–282. Published online 2009 Jul 14. doi: 10.1016/j.jmb.2009.07.016
PMCID:
PMC2766551
AbstractArticlePDF–1019K
13.
Characterization of Novel Alleles of the Escherichia coli umuDC Genes Identifies Additional Interaction Sites of UmuC with the Beta Clamp
Penny J. Beuning, Sarah Chan, Lauren S. Waters, Haripriya Addepalli, Jaylene N. Ollivierre, Graham C. Walker
J Bacteriol. 2009 Oct; 191(19): 5910–5920. Published online 2009 Jul 24. doi: 10.1128/JB.00292-09
PMCID:
PMC2747890
AbstractArticlePDF–1.0M
14.
Biochemical basis for the essential genetic requirements of RecA and the β-clamp in Pol V activation
Shingo Fujii, Robert P. Fuchs
Proc Natl Acad Sci U S A. 2009 Sep 1; 106(35): 14825–14830. Published online 2009 Aug 19. doi: 10.1073/pnas.0905855106
PMCID:
PMC2736454
AbstractArticlePDF–1.1M
15.
The active form of DNA polymerase V is UmuD'2C–RecA–ATP
Qingfei Jiang, Kiyonobu Karata, Roger Woodgate, Michael M. Cox, Myron F. Goodman
Nature. Author manuscript; available in PMC 2009 Aug 25.
Published in final edited form as: Nature. 2009 Jul 16; 460(7253): 359–363. doi: 10.1038/nature08178
PMCID:
PMC2731490
AbstractArticlePDF–434K
16.
Steric Gate Variants of UmuC Confer UV Hypersensitivity on Escherichia coli
Brenna W. Shurtleff, Jaylene N. Ollivierre, Mohammad Tehrani, Graham C. Walker, Penny J. Beuning
J Bacteriol. 2009 Aug; 191(15): 4815–4823. Published online 2008 May 29. doi: 10.1128/JB.01742-08
PMCID:
PMC2715726
AbstractArticlePDF–1.2M
17.
DNA polymerase switching: effects on spontaneous mutagenesis in Escherichia coli
Elena Curti, John P McDonald, Samantha Mead, Roger Woodgate
Mol Microbiol. 2009 Jan; 71(2): 315–331. Published online 2008 Nov 20. doi: 10.1111/j.1365-2958.2008.06526.x
PMCID:
PMC2680738
AbstractArticlePDF–1.0M
18.
Transcriptional Modulator NusA Interacts with Translesion DNA Polymerases in Escherichia coli
Susan E. Cohen, Veronica G. Godoy, Graham C. Walker
J Bacteriol. 2009 Jan; 191(2): 665–672. Published online 2008 Nov 7. doi: 10.1128/JB.00941-08
PMCID:
PMC2620803
AbstractArticlePDF–872K
19.
UV-Induced Mutagenesis in Escherichia coli SOS Response: A Quantitative Model
Sandeep Krishna, Sergei Maslov, Kim Sneppen
PLoS Comput Biol. 2007 Mar; 3(3): e41. Prepublished online 2007 Jan 16. Published online 2007 Mar 16. doi: 10.1371/journal.pcbi.0030041
PMCID:
PMC1828700
AbstractArticlePDF–836K
20.
RecFOR proteins are essential for Pol V-mediated translesion synthesis and mutagenesis
Shingo Fujii, Asako Isogawa, Robert P Fuchs
EMBO J. 2006 Dec 13; 25(24): 5754–5763. Published online 2006 Nov 30. doi: 10.1038/sj.emboj.7601474
PMCID:
PMC1698908
AbstractArticlePDF–528K

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