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Items: 20

1.
Optimized fragmentation schemes and data analysis strategies for proteome-wide cross-link identification
Fan Liu, Philip Lössl, Richard Scheltema, Rosa Viner, Albert J. R. Heck
Nat Commun. 2017; 8: 15473. Published online 2017 May 19. doi: 10.1038/ncomms15473
PMCID:
PMC5454533
AbstractArticlePDF–1.5M
2.
Structures of the ribosome in intermediate states of ratcheting
Wen Zhang, Jack Dunkle, Jamie H. D. Cate
Science. Author manuscript; available in PMC 2010 Aug 10.
Published in final edited form as: Science. 2009 Aug 21; 325(5943): 1014–1017. doi: 10.1126/science.1175275
PMCID:
PMC2919209
AbstractArticlePDF–2.2M
3.
Regulation of the protein-conducting channel by a bound ribosome
James Gumbart, Leonardo G. Trabuco, Eduard Schreiner, Elizabeth Villa, Klaus Schulten
Structure. Author manuscript; available in PMC 2010 Nov 11.
Published in final edited form as: Structure. 2009 Nov 11; 17(11): 1453–1464. doi: 10.1016/j.str.2009.09.010
PMCID:
PMC2778611
AbstractArticlePDF–3.1M
4.
SrmB, a DEAD-box helicase involved in Escherichia coli ribosome assembly, is specifically targeted to 23S rRNA in vivo
Dmitrii Trubetskoy, Florence Proux, Frédéric Allemand, Marc Dreyfus, Isabelle Iost
Nucleic Acids Res. 2009 Oct; 37(19): 6540–6549. Published online 2009 Sep 4. doi: 10.1093/nar/gkp685
PMCID:
PMC2770661
AbstractArticlePDF–3.5M
5.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
AbstractArticlePDF–1.0M
6.
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori
Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050
PMCID:
PMC1681482
AbstractArticlePDF–400K
7.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
8.
Large-scale identification of protein–protein interaction of Escherichia coli K-12
Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori
Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806
PMCID:
PMC1457052
AbstractArticlePDF–536K
9.
RNA chaperone activity of large ribosomal subunit proteins from Escherichia coli
KATHARINA SEMRAD, RACHEL GREEN, RENÉE SCHROEDER
RNA. 2004 Dec; 10(12): 1855–1860. doi: 10.1261/rna.7121704
PMCID:
PMC1370674
AbstractArticlePDF–211K
10.
A short fragment of 23S rRNA containing the binding sites for two ribosomal proteins, L24 and L4, is a key element for rRNA folding during early assembly.
U Stelzl, K H Nierhaus
RNA. 2001 Apr; 7(4): 598–609. doi: 10.1017/s1355838201002059
PMCID:
PMC1370113
SummaryPDF–3.0M
11.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
12.
A temperature-sensitive mutant in the gene rplX for ribosomal protein L24 and its suppression by spontaneous mutations in a 23S rRNA gene of Escherichia coli.
K Nishi, J Schnier
EMBO J. 1986 Jun; 5(6): 1373–1376. doi: 10.1002/j.1460-2075.1986.tb04369.x
PMCID:
PMC1166950
SummaryPage BrowsePDF–931K
13.
Multiple defects in translation associated with altered ribosomal protein L4
Michael O'Connor, Steven T. Gregory, Albert E. Dahlberg
Nucleic Acids Res. 2004; 32(19): 5750–5756. Published online 2004 Oct 27. doi: 10.1093/nar/gkh913
PMCID:
PMC528798
AbstractArticlePDF–203K
14.
A Native Ribonucleoprotein Complex from Escherichia coli Ribosomes
R. R. Crichton, H. G. Wittmann
Proc Natl Acad Sci U S A. 1973 Mar; 70(3): 665–668. doi: 10.1073/pnas.70.3.665
PMCID:
PMC433330
SummaryPage BrowsePDF–1.0M
15.
Initiator proteins for the assembly of the 50S subunit from Escherichia coli ribosomes.
V Nowotny, K H Nierhaus
Proc Natl Acad Sci U S A. 1982 Dec; 79(23): 7238–7242. doi: 10.1073/pnas.79.23.7238
PMCID:
PMC347314
SummaryPage BrowsePDF–1.0M
16.
Localization of a series of RNA-protein cross-link sites in the 23S and 5S ribosomal RNA from Escherichia coli, induced by treatment of 50S subunits with three different bifunctional reagents.
M Osswald, B Greuer, R Brimacombe
Nucleic Acids Res. 1990 Dec 11; 18(23): 6755–6760. doi: 10.1093/nar/18.23.6755
PMCID:
PMC332727
SummaryPage BrowsePDF–1.3M
17.
Translational regulation by ribosomal protein S8 in Escherichia coli: structural homology between rRNA binding site and feedback target on mRNA.
P O Olins, M Nomura
Nucleic Acids Res. 1981 Apr 10; 9(7): 1757–1764. doi: 10.1093/nar/9.7.1757
PMCID:
PMC326795
SummaryPage BrowsePDF–806K
18.
The spc ribosomal protein operon of Escherichia coli: sequence and cotranscription of the ribosomal protein genes and a protein export gene.
D P Cerretti, D Dean, G R Davis, D M Bedwell, M Nomura
Nucleic Acids Res. 1983 May 11; 11(9): 2599–2616. doi: 10.1093/nar/11.9.2599
Correction in:
Nucleic Acids Res. 1983 Sep 10; 11(17): 6156.
PMCID:
PMC325911
SummaryPage BrowsePDF–1.4M
19.
DNA sequence and complementation analysis of a mutation in the rplX gene from Escherichia coli leading to loss of ribosomal protein L24.
K Nishi, E R Dabbs, J Schnier
J Bacteriol. 1985 Sep; 163(3): 890–894. doi: 10.1128/jb.163.3.890-894.1985
PMCID:
PMC219215
SummaryPage BrowsePDF–866K
20.
Spontaneous missense mutations in the rplX gene for ribosomal protein L24 from Escherichia coli.
K Nishi, M Müller, J Schnier
J Bacteriol. 1987 Oct; 169(10): 4854–4856. doi: 10.1128/jb.169.10.4854-4856.1987
PMCID:
PMC213869
SummaryPage BrowsePDF–478K

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