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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107988582.

Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking

Lucas J. Marmorale, Huan Jin, Thomas G. Reidy, Brandon Palomino-Alonso, Christopher J. Zysnarski, Fatima Jordan-Javed, Sagar Lahiri, Mara C. Duncan

J Cell Biol. 2024 Mar 4; 223(3): e202309047. Published online 2024 Jan 19. doi: 10.1083/jcb.202309047

PMCID:: PMC10798858

Abstract Article PDF–6.4M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105517004.

Misregulation of cell cycle-dependent methylation of budding yeast CENP-A contributes to chromosomal instability

Prashant K. Mishra, Wei-Chun Au, Pedro G. Castineira, Nazrin Ali, John Stanton, Lars Boeckmann, Yoshimitsu Takahashi, Michael Costanzo, Charles Boone, Kerry S. Bloom, Peter H. Thorpe, Munira A. Basrai

Mol Biol Cell. 2023 Sep 1; 34(10): ar99. Published online 2023 Aug 17. doi: 10.1091/mbc.E23-03-0108

PMCID:: PMC10551700

Abstract Article PDF–3.7M

Select item 102922105.

Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin

Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison

J Cell Biol. 2023 Sep 4; 222(9): e202207060. Published online 2023 Jun 26. doi: 10.1083/jcb.202207060

PMCID:: PMC10292210

Abstract Article PDF–5.9M

Select item 101007506.

Network Analysis Reveals the Molecular Bases of Statin Pleiotropy That Vary with Genetic Background

Cintya E. del Rio Hernandez, Lani J. Campbell, Paul H. Atkinson, Andrew B. Munkacsi

Microbiol Spectr. 2023 Mar-Apr; 11(2): e04148-22. Published online 2023 Mar 22. doi: 10.1128/spectrum.04148-22

PMCID:: PMC10100750

Abstract Article PDF–6.1M

Select item 96296217.

Comprehensive characterization of the Hsp70 interactome reveals novel client proteins and interactions mediated by posttranslational modifications

Nitika, Bo Zheng, Linhao Ruan, Jake T. Kline, Siddhi Omkar, Jacek Sikora, Mara Texeira Torres, Yuhao Wang, Jade E. Takakuwa, Romain Huguet, Cinzia Klemm, Verónica A. Segarra, Matthew J. Winters, Peter M. Pryciak, Peter H. Thorpe, Kazuo Tatebayashi, Rong Li, Luca Fornelli, Andrew W. Truman

PLoS Biol. 2022 Oct; 20(10): e3001839. Published online 2022 Oct 21. doi: 10.1371/journal.pbio.3001839

PMCID:: PMC9629621

Abstract Article PDF–3.4M

Select item 92098118.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 85769179.

Tubulin isotypes optimize distinct spindle positioning mechanisms during yeast mitosis

Emmanuel T. Nsamba, Abesh Bera, Michael Costanzo, Charles Boone, Mohan L. Gupta, Jr.

J Cell Biol. 2021 Dec 6; 220(12): e202010155. Published online 2021 Nov 5. doi: 10.1083/jcb.202010155

PMCID:: PMC8576917

Abstract Article PDF–7.4M

Select item 771875110.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 754804411.

Engineering endogenous ABC transporter with improving ATP supply and membrane flexibility enhances the secretion of β-carotene in Saccharomyces cerevisiae

Xiao Bu, Jing-Yuan Lin, Jing Cheng, Dong Yang, Chang-Qing Duan, Mattheos Koffas, Guo-Liang Yan

Biotechnol Biofuels. 2020; 13: 168. Published online 2020 Oct 10. doi: 10.1186/s13068-020-01809-6

PMCID:: PMC7548044

Abstract Article PDF–1.3M

Select item 706357112.

Pre-emptive Quality Control of a Misfolded Membrane Protein by Ribosome-Driven Effects

Ramya Lakshminarayan, Ben P. Phillips, Imogen L. Binnian, Natalia Gomez-Navarro, Norberto Escudero-Urquijo, Alan J. Warren, Elizabeth A. Miller

Curr Biol. 2020 Mar 9; 30(5): 854–864.e5. doi: 10.1016/j.cub.2019.12.060

PMCID:: PMC7063571

Abstract Article

Select item 672193413.

Live-cell assays reveal selectivity and sensitivity of the multidrug response in budding yeast

Elena Vanacloig-Pedros, Carlos Lozano-Pérez, Benito Alarcón, Amparo Pascual-Ahuir, Markus Proft

J Biol Chem. 2019 Aug 30; 294(35): 12933–12946. Published online 2019 Jul 11. doi: 10.1074/jbc.RA119.009291

PMCID:: PMC6721934

Abstract Article PDF–5.6M

Select item 667894514.

Tunicamycin Sensitivity-Suppression by High Gene Dosage Reveals New Functions of the Yeast Hog1 MAP Kinase

Mariana Hernández-Elvira, Ricardo Martínez-Gómez, Eunice Domínguez-Martin, Akram Méndez, Laura Kawasaki, Laura Ongay-Larios, Roberto Coria

Cells. 2019 Jul; 8(7): 710. Published online 2019 Jul 12. doi: 10.3390/cells8070710

PMCID:: PMC6678945

Abstract Article PDF–7.7M

Select item 645661815.

Iterative screening methodology enables isolation of strains with improved properties for a FACS-based screen and increased L-DOPA production

Judy Savitskaya, Ryan J. Protzko, Francesca-Zhoufan Li, Adam P. Arkin, John E. Dueber

Sci Rep. 2019; 9: 5815. Published online 2019 Apr 9. doi: 10.1038/s41598-019-41759-0

PMCID:: PMC6456618

Abstract Article PDF–1.2M

Select item 621571316.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 607699917.

Genome-wide SWAp-tag yeast libraries for proteome exploration

Uri Weill, Ido Yofe, Ehud Sass, Bram Stynen, Dan Davidi, Janani Natarajan, Reut Ben Menachem, Zohar Avihou, Omer Goldman, Nofar Harpaz, Silvia Chuartzman, Kiril Kniazev, Barbara Knoblach, Janina Laborenz, Felix Boos, Jacqueline Kowarzyk, Shifra Ben-Dor, Einat Zalckvar, Johannes M. Herrmann, Richard A. Rachubinski, Ophry Pines, Doron Rapaport, Stephen W. Michnick, Emmanuel D. Levy, Maya Schuldiner

Nat Methods. Author manuscript; available in PMC 2019 Jan 9.

Published in final edited form as: Nat Methods. 2018 Aug; 15(8): 617–622. Published online 2018 Jul 9. doi: 10.1038/s41592-018-0044-9