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Select item 111940661.

Interplay of the Tfb1 pleckstrin homology domain with Rad2 and Rad4 in transcription coupled and global genomic nucleotide excision repair

Wenzhi Gong, Hannah Holmberg, Cheng Lu, Michelle Huang, Shisheng Li

Nucleic Acids Res. 2024 Jun 24; 52(11): 6333–6346. Published online 2024 Apr 18. doi: 10.1093/nar/gkae286

PMCID:: PMC11194066

Abstract Article PDF–2.4M

Select item 108724772.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 98363483.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 67534725.

Functional interplay between Mediator and RNA polymerase II in Rad2/XPG loading to the chromatin

Adrien Georges, Diyavarshini Gopaul, Cyril Denby Wilkes, Nathalie Giordanengo Aiach, Elizaveta Novikova, Marie-Bénédicte Barrault, Olivier Alibert, Julie Soutourina

Nucleic Acids Res. 2019 Sep 26; 47(17): 8988–9004. Published online 2019 Jul 12. doi: 10.1093/nar/gkz598

PMCID:: PMC6753472

Abstract Article PDF–3.2M

Select item 57653596.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 57482817.

Growth Inhibition and DNA Damage Induced by X-Phenols in Yeast: A Quantitative Structure–Activity Relationship Study

M. Cristina Negritto, Clarissa Valdez, Jasmine Sharma, Christa Rosenberg, Cynthia R. Selassie

ACS Omega. 2017 Dec 31; 2(12): 8568–8579. Published online 2017 Dec 1. doi: 10.1021/acsomega.7b01200

PMCID:: PMC5748281

Abstract Article PDF–2.1M

Select item 56618858.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 56359169.

Cytosine deamination and base excision repair cause R-loop–induced CAG repeat fragility and instability in Saccharomyces cerevisiae

Xiaofeng A. Su, Catherine H. Freudenreich

Proc Natl Acad Sci U S A. 2017 Oct 3; 114(40): E8392–E8401. Published online 2017 Sep 18. doi: 10.1073/pnas.1711283114

PMCID:: PMC5635916

Abstract Article PDF–1.1M

Select item 534755910.

Hypermutation signature reveals a slippage and realignment model of translesion synthesis by Rev3 polymerase in cisplatin-treated yeast

Romulo Segovia, Yaoqing Shen, Scott A. Lujan, Steven J. M. Jones, Peter C. Stirling

Proc Natl Acad Sci U S A. 2017 Mar 7; 114(10): 2663–2668. Published online 2017 Feb 21. doi: 10.1073/pnas.1618555114

PMCID:: PMC5347559

Abstract Article PDF–1011K

Select item 520924511.

A network of conserved synthetic lethal interactions for exploration of precision cancer therapy

Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M. Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L. Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W. Sobol, Trey Ideker

Mol Cell. Author manuscript; available in PMC 2017 Aug 4.

Published in final edited form as: Mol Cell. 2016 Aug 4; 63(3): 514–525. Published online 2016 Jul 21. doi: 10.1016/j.molcel.2016.06.022

PMCID:: PMC5209245

Abstract Article PDF–1.6M

Select item 513742612.

Incision of damaged DNA in the presence of an impaired Smc5/6 complex imperils genome stability

Jie Peng, Wenyi Feng

Nucleic Acids Res. 2016 Dec 1; 44(21): 10216–10229. Published online 2016 Aug 17. doi: 10.1093/nar/gkw720

PMCID:: PMC5137426

Abstract Article PDF–6.6M

Select item 500159513.

Sen1, the yeast homolog of human senataxin, plays a more direct role than Rad26 in transcription coupled DNA repair

Wentao Li, Kathiresan Selvam, Sheikh A. Rahman, Shisheng Li

Nucleic Acids Res. 2016 Aug 19; 44(14): 6794–6802. Published online 2016 May 13. doi: 10.1093/nar/gkw428

PMCID:: PMC5001595

Abstract Article PDF–12M

Select item 461603914.

Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p

Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt

Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518

PMCID:: PMC4616039

Abstract Article PDF–2.2M

Select item 455996215.

Wss1 metalloprotease partners with Cdc48/Doa1 in processing genotoxic SUMO conjugates

Maxim Y Balakirev, James E Mullally, Adrien Favier, Nicole Assard, Eric Sulpice, David F Lindsey, Anastasia V Rulina, Xavier Gidrol, Keith D Wilkinson

eLife. 2015; 4: e06763. Published online 2015 Sep 8. doi: 10.7554/eLife.06763