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Select item 107001381.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102333682.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 98363483.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 95745144.

Elucidation of the interaction proteome of mitochondrial chaperone Hsp78 highlights its role in protein aggregation during heat stress

Witold Jaworek, Marc Sylvester, Giovanna Cenini, Wolfgang Voos

J Biol Chem. 2022 Oct; 298(10): 102494. Published online 2022 Sep 15. doi: 10.1016/j.jbc.2022.102494

PMCID:: PMC9574514

Abstract Article PDF–1.9M

Select item 92098115.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 70540886.

Redox Engineering by Ectopic Overexpression of NADH Kinase in Recombinant Pichia pastoris (Komagataella phaffii): Impact on Cell Physiology and Recombinant Production of Secreted Proteins

Màrius Tomàs-Gamisans, Cristiane Conte Paim Andrade, Francisco Maresca, Sergi Monforte, Pau Ferrer, Joan Albiol

Appl Environ Microbiol. 2020 Mar; 86(6): e02038-19. Prepublished online 2019 Nov 22. Published online 2020 Mar 2. doi: 10.1128/AEM.02038-19

PMCID:: PMC7054088

Abstract Article PDF–3.2M

Select item 69450347.

A Genetic Screen To Identify Genes Influencing the Secondary Redox Couple NADPH/NADP⁺ in the Yeast Saccharomyces cerevisiae

Shambhu Yadav, Tejasvinee Atul Mody, Archi Sharma, Anand Kumar Bachhawat

G3 (Bethesda) 2020 Jan; 10(1): 371–378. Published online 2019 Nov 22. doi: 10.1534/g3.119.400606

PMCID:: PMC6945034

Abstract Article PDF–1.3M

Select item 54845448.

The yeast protein kinase Sch9 adjusts V-ATPase assembly/disassembly to control pH homeostasis and longevity in response to glucose availability

Tobias Wilms, Erwin Swinnen, Elja Eskes, Laura Dolz-Edo, Alice Uwineza, Ruben Van Essche, Joëlle Rosseels, Piotr Zabrocki, Elisabetta Cameroni, Vanessa Franssens, Claudio De Virgilio, Gertien J. Smits, Joris Winderickx

PLoS Genet. 2017 Jun; 13(6): e1006835. Published online 2017 Jun 12. doi: 10.1371/journal.pgen.1006835

PMCID:: PMC5484544

Abstract Article PDF–14M

Select item 52043489.

A novel translational control mechanism involving RNA structures within coding sequences

Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez

Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116

Correction in:: Genome Res. 2017 Apr; 27(4): 663.

PMCID:: PMC5204348

Abstract Article PDF–1.3M

Select item 484875810.

An inter‐species protein–protein interaction network across vast evolutionary distance

Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal

Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484

PMCID:: PMC4848758

Abstract Article PDF–2.1M

Select item 447280811.

RSC Chromatin-Remodeling Complex Is Important for Mitochondrial Function in Saccharomyces cerevisiae

Yuko Imamura, Feifei Yu, Misaki Nakamura, Yuhki Chihara, Kyo Okane, Masahiro Sato, Muneyoshi Kanai, Ryoko Hamada, Masaru Ueno, Masashi Yukawa, Eiko Tsuchiya

PLoS One. 2015; 10(6): e0130397. Published online 2015 Jun 18. doi: 10.1371/journal.pone.0130397

PMCID:: PMC4472808

Abstract Article PDF–1.0M

Select item 441686412.

Mitochondrial Heat Shock Protein (Hsp) 70 and Hsp10 Cooperate in the Formation of Hsp60 Complexes

Lena Böttinger, Silke Oeljeklaus, Bernard Guiard, Sabine Rospert, Bettina Warscheid, Thomas Becker

J Biol Chem. 2015 May 1; 290(18): 11611–11622. Published online 2015 Mar 18. doi: 10.1074/jbc.M115.642017

PMCID:: PMC4416864

Abstract Article PDF–3.4M

Select item 417536513.

The Mitochondrial ADP/ATP Carrier Associates with the Inner Membrane Presequence Translocase in a Stoichiometric Manner

Carola S. Mehnert, Heike Rampelt, Michael Gebert, Silke Oeljeklaus, Sandra G. Schrempp, Lioba Kochbeck, Bernard Guiard, Bettina Warscheid, Martin van der Laan

J Biol Chem. 2014 Sep 26; 289(39): 27352–27362. Published online 2014 Aug 14. doi: 10.1074/jbc.M114.556498

PMCID:: PMC4175365

Abstract Article PDF–1.5M

Select item 415471514.

Quantification of Protein Copy Number in Yeast: The NAD⁺ Metabolome

Szu-Chieh Mei, Charles Brenner

PLoS One. 2014; 9(9): e106496. Published online 2014 Sep 4. doi: 10.1371/journal.pone.0106496

PMCID:: PMC4154715

Abstract Article PDF–2.0M

Select item 383846515.

Molecular mechanisms underlying genotype-dependent responses to dietary restriction

Jennifer Schleit, Simon C. Johnson, Christopher F. Bennett, Marissa Simko, Natalie Trongtham, Anthony Castanza, Edward J. Hsieh, Richard M. Moller, Brian M. Wasko, Joe R. Delaney, George L. Sutphin, Daniel Carr, Christopher J. Murakami, Autumn Tocchi, Bo Xian, Weiyang Chen, Tao Yu, Sarani Goswami, Sean Higgins, Mollie Holmberg, Ki-Soo Jeong, Jin R. Kim, Shannon Klum, Eric Liao, Michael S. Lin, Winston Lo, Hillary Miller, Brady Olsen, Zhao J. Peng, Tom Pollard, Prarthana Pradeep, Dillon Pruett, Dilreet Rai, Vanessa Ros, Minnie Singh, Benjamin L. Spector, Helen Vander Wende, Elroy H. An, Marissa Fletcher, Monika Jelic, Peter S. Rabinovitch, Michael J. MacCoss, Jing-Dong J. Han, Brian K. Kennedy, Matt Kaeberlein

Aging Cell. Author manuscript; available in PMC 2014 Dec 1.

Published in final edited form as: Aging Cell. 2013 Dec; 12(6): 10.1111/acel.12130. Published online 2013 Aug 11. doi: 10.1111/acel.12130

PMCID:: PMC3838465

Abstract Article PDF–2.3M

Select item 343895316.

Effects of a Mitochondrial Mutator Mutation in Yeast POS5 NADH Kinase on Mitochondrial Nucleotides

Linda J. Wheeler, Christopher K. Mathews

J Biol Chem. 2012 Sep 7; 287(37): 31218–31222. Published online 2012 Jul 26. doi: 10.1074/jbc.M112.394031

PMCID:: PMC3438953

Abstract Article PDF–705K

Select item 343211517.

Recruitment of Rpd3 to the Telomere Depends on the Protein Arginine Methyltransferase Hmt1

Eric J. Milliman, Neelu Yadav, Yin-Chu Chen, Bhavana Muddukrishna, Sheelarani Karunanithi, Michael C. Yu

PLoS One. 2012; 7(8): e44656. Published online 2012 Aug 31. doi: 10.1371/journal.pone.0044656

Correction in:: PLoS One. 2015; 10(3): e0120968.

PMCID:: PMC3432115

Abstract Article PDF–1.7M

Select item 328959618.

Induction of Biogenic Magnetization and Redox Control by a Component of the Target of Rapamycin Complex 1 Signaling Pathway

Keiji Nishida, Pamela A. Silver

PLoS Biol. 2012 Feb; 10(2): e1001269. Published online 2012 Feb 28. doi: 10.1371/journal.pbio.1001269

PMCID:: PMC3289596

Abstract Article PDF–2.2M

Select item 319103919.

Structural Determinants of Discrimination of NAD⁺ from NADH in Yeast Mitochondrial NADH Kinase Pos5

Takuya Ando, Kazuto Ohashi, Akihito Ochiai, Bunzo Mikami, Shigeyuki Kawai, Kousaku Murata

J Biol Chem. 2011 Aug 26; 286(34): 29984–29992. Published online 2011 Jul 7. doi: 10.1074/jbc.M111.249011

PMCID:: PMC3191039

Abstract Article PDF–3.3M

Select item 312543920.

An integrated approach to characterize genetic interaction networks in yeast metabolism

Balázs Szappanos, Károly Kovács, Béla Szamecz, Frantisek Honti, Michael Costanzo, Anastasia Baryshnikova, Gabriel Gelius-Dietrich, Martin J. Lercher, Márk Jelasity, Chad L. Myers, Brenda J. Andrews, Charles Boone, Stephen G. Oliver, Csaba Pál, Balázs Papp

Nat Genet. Author manuscript; available in PMC 2012 Jan 1.

Published in final edited form as: Nat Genet. 2011 Jul; 43(7): 656–662. Published online 2011 May 29. doi: 10.1038/ng.846

PMCID:: PMC3125439

Abstract Article PDF–2.5M

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