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Select item 114236781.

An APEX2-based proximity-dependent biotinylation assay with temporal specificity to study protein interactions during autophagy in the yeast Saccharomyces cerevisiae

Yasmina Filali-Mouncef, Alexandre Leytens, Prado Vargas Duarte, Mattia Zampieri, Jörn Dengjel, Fulvio Reggiori

Autophagy. 2024; 20(10): 2323–2337. Published online 2024 Jul 3. doi: 10.1080/15548627.2024.2366749

PMCID:: PMC11423678

Abstract Article PDF–1.7M

Select item 112788182.

Protein Kinase A Negatively Regulates the Acetic Acid Stress Response in S. cerevisiae

Natasha M. Bourgeois, Joshua J. Black, Manika Bhondeley, Zhengchang Liu

Microorganisms. 2024 Jul; 12(7): 1452. Published online 2024 Jul 17. doi: 10.3390/microorganisms12071452

PMCID:: PMC11278818

Abstract Article PDF–2.0M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102333684.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 96380285.

Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress

Michelle Harreman Lehner, Jane Walker, Kotryna Temcinaite, Anna Herlihy, Michael Taschner, Adam C. Berger, Anita H. Corbett, A. Barbara Dirac Svejstrup, Jesper Q. Svejstrup

Cell Rep. 2022 Oct 25; 41(4): 111536. Published online 2022 Oct 25. doi: 10.1016/j.celrep.2022.111536

PMCID:: PMC9638028

Abstract Article

Select item 95151436.

Phosphorylation of Jhd2 by the Ras-cAMP-PKA(Tpk2) pathway regulates histone modifications and autophagy

Qi Yu, Xuanyunjing Gong, Yue Tong, Min Wang, Kai Duan, Xinyu Zhang, Feng Ge, Xilan Yu, Shanshan Li

Nat Commun. 2022; 13: 5675. Published online 2022 Sep 27. doi: 10.1038/s41467-022-33423-5

PMCID:: PMC9515143

Abstract Article PDF–3.4M

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 85119508.

The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions

Rajaraman Gopalakrishnan, Fred Winston

J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205

PMCID:: PMC8511950

Abstract Article PDF–3.1M

Select item 84696929.

Regulation of Copper Metabolism by Nitrogen Utilization in Saccharomyces cerevisiae

Suzie Kang, Hyewon Seo, Min-Gyu Lee, Cheol-Won Yun

J Fungi (Basel) 2021 Sep; 7(9): 756. Published online 2021 Sep 14. doi: 10.3390/jof7090756

PMCID:: PMC8469692

Abstract Article PDF–1.3M

Select item 837314210.

The conserved Tpk1 regulates non-homologous end joining double-strand break repair by phosphorylation of Nej1, a homolog of the human XLF

Matthew Jessulat, Shahreen Amin, Mohsen Hooshyar, Ramy Malty, Mohamed Taha Moutaoufik, Mara Zilocchi, Zoe Istace, Sadhna Phanse, Hiroyuki Aoki, Katayoun Omidi, Daniel Burnside, Bahram Samanfar, Khaled A Aly, Ashkan Golshani, Mohan Babu

Nucleic Acids Res. 2021 Aug 20; 49(14): 8145–8160. Published online 2021 Jul 9. doi: 10.1093/nar/gkab585

PMCID:: PMC8373142

Abstract Article PDF–2.0M

Select item 816402711.

Tolerance to nascent protein misfolding stress requires fine-tuning of the cAMP/PKA pathway

Paraskevi Kritsiligkou, Karol Nowicki-Osuch, Zorana Carter, Chris J. Kershaw, Declan R. Creamer, Alan J. Weids, Chris M. Grant

J Biol Chem. 2021 Jan-Jun; 296: 100690. Published online 2021 Apr 22. doi: 10.1016/j.jbc.2021.100690

PMCID:: PMC8164027

Abstract Article PDF–3.3M

Select item 778072412.

Nutrient sensing and cAMP signaling in yeast: G-protein coupled receptor versus transceptor activation of PKA

Griet Van Zeebroeck, Liesbeth Demuyser, Zhiqiang Zhang, Ines Cottignie, Johan M. Thevelein

Microb Cell. 2021 Jan 4; 8(1): 17–27. Published online 2020 Oct 12. doi: 10.15698/mic2021.01.740

PMCID:: PMC7780724

Abstract Article PDF–1.1M

Select item 716969813.

Glucose signalling pathway controls the programmed ribosomal frameshift efficiency in retroviral‐like element Ty3 in Saccharomyces cerevisiae

Sezai Türkel, Güliz Kaplan, Philip J. Farabaugh

Yeast. 2011 Nov; 28(11): 799–808. Published online 2011 Oct 12. doi: 10.1002/yea.1906

PMCID:: PMC7169698

Abstract Article PDF–160K

Select item 712447214.

Chemical Genetics of AGC-kinases Reveals Shared Targets of Ypk1, Protein Kinase A and Sch9

Michael Plank, Mariya Perepelkina, Markus Müller, Stefania Vaga, Xiaoming Zou, Clélia Bourgoint, Marina Berti, Jacques Saarbach, Steven Haesendonckx, Nicolas Winssinger, Ruedi Aebersold, Robbie Loewith

Mol Cell Proteomics. 2020 Apr; 19(4): 655–671. Published online 2020 Feb 26. doi: 10.1074/mcp.RA120.001955