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Items: 1 to 20 of 23

1.
TBX3 is essential for establishment of the posterior boundary of anterior genes and upregulation of posterior genes together with HAND2 during the onset of limb bud development
Geoffrey Soussi, Ausra Girdziusaite, Shalu Jhanwar, Victorio Palacio, Marco Notaro, Rushikesh Sheth, Rolf Zeller, Aimée Zuniga
Development. 2024 Jun 1; 151(11): dev202722. Published online 2024 Jun 3. doi: 10.1242/dev.202722
PMCID:
PMC11190573
AbstractArticle
2.
Genetic determinants of micronucleus formation in vivo
D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus
Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0
PMCID:
PMC10917660
AbstractArticlePDF–4.8M
3.
Single cell enhancer activity distinguishes GABAergic and cholinergic lineages in embryonic mouse basal ganglia
Linda Su-Feher, Anna N. Rubin, Shanni N. Silberberg, Rinaldo Catta-Preta, Kenneth J. Lim, Athena R. Ypsilanti, Iva Zdilar, Christopher S. McGinnis, Gabriel L. McKinsey, Thomas E. Rubino, Jr., Michael J. Hawrylycz, Carol Thompson, Zev J. Gartner, Luis Puelles, Hongkui Zeng, John L. R. Rubenstein, Alex S. Nord
Proc Natl Acad Sci U S A. 2022 Apr 12; 119(15): e2108760119. Published online 2022 Apr 4. doi: 10.1073/pnas.2108760119
PMCID:
PMC9169651
AbstractArticlePDF–3.9M
4.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
5.
Gene co-regulation by Fezf2 selects neurotransmitter identity and connectivity of corticospinal neurons
Simona Lodato, Bradley J Molyneaux, Emanuela Zuccaro, Loyal A Goff, Hsu-Hsin Chen, Wen Yuan, Alyssa Meleski, Emi Takahashi, Shaun Mahony, John L Rinn, David K Gifford, Paola Arlotta
Nat Neurosci. Author manuscript; available in PMC 2015 Feb 1.
Published in final edited form as: Nat Neurosci. 2014 Aug; 17(8): 1046–1054. Published online 2014 Jul 6. doi: 10.1038/nn.3757
PMCID:
PMC4188416
AbstractArticlePDF–2.2M
6.
TSHZ1-dependent gene regulation is essential for olfactory bulb development and olfaction
Daniela Ragancokova, Elena Rocca, Anne M.M. Oonk, Herbert Schulz, Elvira Rohde, Jan Bednarsch, Ilse Feenstra, Ronald J.E. Pennings, Hagen Wende, Alistair N. Garratt
J Clin Invest. 2014 Mar 3; 124(3): 1–14. Published online 2014 Feb 3. doi: 10.1172/JCI72466
Correction in:
J Clin Invest. 2022 Aug 15; 132(16): e163087.
PMCID:
PMC3934178
AbstractArticlePDF–7.0M
7.
The protomap is propagated to cortical plate neurons through an Eomes-dependent intermediate map
Gina E. Elsen, Rebecca D. Hodge, Francesco Bedogni, Ray A. M. Daza, Branden R. Nelson, Naoko Shiba, Steven L. Reiner, Robert F. Hevner
Proc Natl Acad Sci U S A. 2013 Mar 5; 110(10): 4081–4086. Published online 2013 Feb 19. doi: 10.1073/pnas.1209076110
PMCID:
PMC3593833
AbstractArticlePDF–1.0M
8.
Global Gene Expression Analysis of Murine Limb Development
Leila Taher, Nicole M. Collette, Deepa Murugesh, Evan Maxwell, Ivan Ovcharenko, Gabriela G. Loots
PLoS One. 2011; 6(12): e28358. Published online 2011 Dec 9. doi: 10.1371/journal.pone.0028358
PMCID:
PMC3235105
AbstractArticlePDF–4.5M
9.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
10.
The planar cell polarity gene Vangl2 is required for mammalian kidney-branching morphogenesis and glomerular maturation
Laura L. Yates, Jenny Papakrivopoulou, David A. Long, Paraskevi Goggolidou, John O. Connolly, Adrian S. Woolf, Charlotte H. Dean
Hum Mol Genet. 2010 Dec 1; 19(23): 4663–4676. Published online 2010 Sep 14. doi: 10.1093/hmg/ddq397
PMCID:
PMC2972698
AbstractArticlePDF–838K
11.
Tbr1 regulates regional and laminar identity of postmitotic neurons in developing neocortex
Francesco Bedogni, Rebecca D. Hodge, Gina E. Elsen, Branden R. Nelson, Ray A. M. Daza, Richard P. Beyer, Theo K. Bammler, John L. R. Rubenstein, Robert F. Hevner
Proc Natl Acad Sci U S A. 2010 Jul 20; 107(29): 13129–13134. Published online 2010 Jul 6. doi: 10.1073/pnas.1002285107
PMCID:
PMC2919950
AbstractArticlePDF–1.2M
12.
Dlx1&2 and Mash1 Transcription Factors Control Striatal Patterning and Differentiation Through Parallel and Overlapping Pathways
Jason E. Long, Christo Swan, Winnie S. Liang, Inma Cobos, Gregory B. Potter, John L. R. Rubenstein
J Comp Neurol. Author manuscript; available in PMC 2010 Feb 1.
Published in final edited form as: J Comp Neurol. 2009 Feb 1; 512(4): 556–572. doi: 10.1002/cne.21854
PMCID:
PMC2761428
AbstractArticlePDF–8.6M
13.
Dlx1&2 and Mash1 Transcription Factors Control MGE and CGE Patterning and Differentiation through Parallel and Overlapping Pathways
Jason E. Long, Inma Cobos, Greg B. Potter, John L. R. Rubenstein
Cereb Cortex. 2009 Jul; 19(Suppl 1): i96–i106. Published online 2009 Apr 22. doi: 10.1093/cercor/bhp045
PMCID:
PMC2693539
AbstractArticlePDF–838K
14.
FE65 Binds Teashirt, Inhibiting Expression of the Primate-Specific Caspase-4
Yuji Kajiwara, Afia Akram, Pavel Katsel, Vahram Haroutunian, James Schmeidler, Gary Beecham, Jonathan L. Haines, Margaret A. Pericak-Vance, Joseph D. Buxbaum
PLoS One. 2009; 4(4): e5071. Published online 2009 Apr 3. doi: 10.1371/journal.pone.0005071
PMCID:
PMC2660419
AbstractArticlePDF–606K
15.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
16.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
17.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
18.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M
19.
Characterization of Sleeping Beauty Transposition and Its Application to Genetic Screening in Mice
Kyoji Horie, Kosuke Yusa, Kojiro Yae, Junko Odajima, Sylvia E. J. Fischer, Vincent W. Keng, Tomoko Hayakawa, Sumi Mizuno, Gen Kondoh, Takashi Ijiri, Yoichi Matsuda, Ronald H. A. Plasterk, Junji Takeda
Mol Cell Biol. 2003 Dec; 23(24): 9189–9207. doi: 10.1128/MCB.23.24.9189-9207.2003
PMCID:
PMC309709
AbstractArticlePDF–929K
20.
Transcriptome Analysis of Mouse Stem Cells and Early Embryos
Alexei A Sharov, Yulan Piao, Ryo Matoba, Dawood B Dudekula, Yong Qian, Vincent VanBuren, Geppino Falco, Patrick R Martin, Carole A Stagg, Uwem C Bassey, Yuxia Wang, Mark G Carter, Toshio Hamatani, Kazuhiro Aiba, Hidenori Akutsu, Lioudmila Sharova, Tetsuya S Tanaka, Wendy L Kimber, Toshiyuki Yoshikawa, Saied A Jaradat, Serafino Pantano, Ramaiah Nagaraja, Kenneth R Boheler, Dennis Taub, Richard J Hodes, Dan L Longo, David Schlessinger, Jonathan Keller, Emily Klotz, Garnett Kelsoe, Akihiro Umezawa, Angelo L Vescovi, Janet Rossant, Tilo Kunath, Brigid L. M Hogan, Anna Curci, Michele D'Urso, Janet Kelso, Winston Hide, Minoru S. H Ko
PLoS Biol. 2003 Dec; 1(3): e74. Published online 2003 Dec 22. doi: 10.1371/journal.pbio.0000074
PMCID:
PMC300684
AbstractArticlePDF–572K

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