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Items: 1 to 20 of 31

1.
A natural variation-based screen in mouse cells reveals USF2 as a regulator of the DNA damage response and cellular senescence
Taekyu Kang, Emily C Moore, Emily E K Kopania, Christina D King, Birgit Schilling, Judith Campisi, Jeffrey M Good, Rachel B Brem
G3 (Bethesda) 2023 Jul; 13(7): jkad091. Published online 2023 Apr 25. doi: 10.1093/g3journal/jkad091
PMCID:
PMC10320765
AbstractArticlePDF–1.4M
2.
Identification of KLF6/PSGs and NPY-Related USF2/CEACAM Transcriptional Regulatory Networks via Spinal Cord Bulk and Single-Cell RNA-Seq Analysis
Xinbing Liu, Wei Gao, Wei Liu
Dis Markers. 2021; 2021: 2826609. Published online 2021 Nov 29. doi: 10.1155/2021/2826609
PMCID:
PMC8648463
AbstractArticlePDF–5.6M
3.
Phylogenetic and expression analysis of the basic helix-loop-helix transcription factor gene family: genomic approach to cellular differentiation
Jeffrey D. Stevens, Eric H. Roalson, Michael K. Skinner
Differentiation. Author manuscript; available in PMC 2017 Dec 13.
Published in final edited form as: Differentiation. 2008 Nov; 76(9): 1006–1022. Published online 2008 Jun 4. doi: 10.1111/j.1432-0436.2008.00285.x
PMCID:
PMC5728086
AbstractArticlePDF–2.4M
4.
A high resolution spatiotemporal atlas of gene expression of the developing mouse brain
Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones
Neuron. Author manuscript; available in PMC 2015 Jul 16.
Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033
PMCID:
PMC4319559
AbstractArticlePDF–3.0M
5.
Upstream Stimulatory Factors 1 and 2 Mediate the Transcription of Angiotensin II Binding and Inhibitory Protein
Miyuki Matsuda, Kouichi Tamura, Hiromichi Wakui, Akinobu Maeda, Masato Ohsawa, Tomohiko Kanaoka, Kengo Azushima, Kazushi Uneda, Sona Haku, Yuko Tsurumi-Ikeya, Yoshiyuki Toya, Yohei Maeshima, Akio Yamashita, Satoshi Umemura
J Biol Chem. 2013 Jun 28; 288(26): 19238–19249. Published online 2013 May 7. doi: 10.1074/jbc.M113.451054
PMCID:
PMC3696694
AbstractArticlePDF–3.1M
6.
Upstream Stimulatory Factor 2 and Hypoxia-Inducible Factor 2α (HIF2α) Cooperatively Activate HIF2 Target Genes during Hypoxia
Matthew R. Pawlus, Liyi Wang, Katie Ware, Cheng-Jun Hu
Mol Cell Biol. 2012 Nov; 32(22): 4595–4610. doi: 10.1128/MCB.00724-12
PMCID:
PMC3486188
AbstractArticlePDF–2.2M
7.
A Genome-Wide Screen to Identify Transcription Factors Expressed in Pelvic Ganglia of the Lower Urinary Tract
Carrie B. Wiese, Sara Ireland, Nicole L. Fleming, Jing Yu, M. Todd Valerius, Kylie Georgas, Han Sheng Chiu, Jane Brennan, Jane Armstrong, Melissa H. Little, Andrew P. McMahon, E. Michelle Southard-Smith
Front Neurosci. 2012; 6: 130. Published online 2012 Sep 12. doi: 10.3389/fnins.2012.00130
PMCID:
PMC3439845
AbstractArticlePDF–1.4M
8.
Gene Trapping Uncovers Gender-Specific Mechanisms for Upstream Stimulatory Factors 1 and 2 in Angiotensinogen Expression
Sungmi Park, Xuebo Liu, Deborah R. Davis, Curt D. Sigmund
Hypertension. Author manuscript; available in PMC 2013 Jun 1.
Published in final edited form as: Hypertension. 2012 Jun; 59(6): 1212–1219. Published online 2012 Apr 30. doi: 10.1161/HYPERTENSIONAHA.112.192971
PMCID:
PMC3357008
AbstractArticlePDF–2.0M
9.
DNA double-strand breaks relieve USF-mediated repression of Dβ2 germline transcription in developing thymocytes
Jennifer L. Stone, Ruth E. McMillan, David A. Skaar, Justin M. Bradshaw, Randy L. Jirtle, Michael L. Sikes
J Immunol. Author manuscript; available in PMC 2013 Mar 1.
Published in final edited form as: J Immunol. 2012 Mar 1; 188(5): 2266–2275. Published online 2012 Jan 27. doi: 10.4049/jimmunol.1002931
PMCID:
PMC3288432
AbstractArticlePDF–805K
10.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
11.
A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58
Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara
Dev Cell. Author manuscript; available in PMC 2011 Jun 7.
Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011
PMCID:
PMC3110151
AbstractArticlePDF–2.0M
12.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
13.
An insulator with barrier-element activity promotes α-spectrin gene expression in erythroid cells
Patrick G. Gallagher, Douglas G. Nilson, Laurie A. Steiner, Yelena D. Maksimova, Jolinta Y. Lin, David M. Bodine
Blood. 2009 Feb 12; 113(7): 1547–1554. Prepublished online 2008 Nov 13. doi: 10.1182/blood-2008-06-164954
PMCID:
PMC2644083
AbstractArticle
14.
In Vivo Regulation of Follicle-Stimulating Hormone Receptor by the Transcription Factors Upstream Stimulatory Factor 1 and Upstream Stimulatory Factor 2 Is Cell Specific
Brian P. Hermann, Kaori Hornbaker, Daren A. Rice, Michele Sawadogo, Leslie L. Heckert
Endocrinology. 2008 Oct; 149(10): 5297–5306. Published online 2008 Jun 19. doi: 10.1210/en.2007-1199
PMCID:
PMC2582914
AbstractArticle
15.
Nonconventional Involvement of LysRS in the Molecular Mechanism of USF2 Transcriptional Activity in FcɛRI-Activated Mast Cells
Yu-Nee Lee, Ehud Razin
Mol Cell Biol. 2005 Oct; 25(20): 8904–8912. doi: 10.1128/MCB.25.20.8904-8912.2005
PMCID:
PMC1265770
AbstractArticlePDF–313K
16.
Tagging genes with cassette-exchange sites
Gilda Cobellis, Giancarlo Nicolaus, Mariangela Iovino, Antonio Romito, Emanuele Marra, Manlio Barbarisi, Marco Sardiello, Francesco P. Di Giorgio, Nicola Iovino, Massimo Zollo, Andrea Ballabio, Riccardo Cortese
Nucleic Acids Res. 2005; 33(4): e44. Published online 2005 Mar 1. doi: 10.1093/nar/gni045
PMCID:
PMC552971
AbstractArticlePDF–382K
17.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
18.
Ubiquitous expression of the 43- and 44-kDa forms of transcription factor USF in mammalian cells.
M Sirito, Q Lin, T Maity, M Sawadogo
Nucleic Acids Res. 1994 Feb 11; 22(3): 427–433. doi: 10.1093/nar/22.3.427
PMCID:
PMC523599
SummaryPage BrowsePDF–1.8M
19.
Genomic Analysis of Mouse Retinal Development
Seth Blackshaw, Sanjiv Harpavat, Jeff Trimarchi, Li Cai, Haiyan Huang, Winston P Kuo, Griffin Weber, Kyungjoon Lee, Rebecca E Fraioli, Seo-Hee Cho, Rachel Yung, Elizabeth Asch, Lucila Ohno-Machado, Wing H Wong, Constance L Cepko
PLoS Biol. 2004 Sep; 2(9): e247. Published online 2004 Jun 29. doi: 10.1371/journal.pbio.0020247
PMCID:
PMC439783
AbstractArticlePDF–975K
20.
Construction of Long-Transcript Enriched cDNA Libraries from Submicrogram Amounts of Total RNAs by a Universal PCR Amplification Method
Yulan Piao, Naomi T. Ko, Meng K. Lim, Minoru S.H. Ko
Genome Res. 2001 Sep; 11(9): 1553–1558. doi: 10.1101/gr.185501
PMCID:
PMC311119
AbstractArticlePDF–743K

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