PMC Links for GEO Profiles (Select 89869479) - PMC

Select item 81650301.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 55316112.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 48821903.

Widespread expansion of protein interaction capabilities by alternative splicing

Xinping Yang, Jasmin Coulombe-Huntington, Shuli Kang, Gloria M. Sheynkman, Tong Hao, Aaron Richardson, Song Sun, Fan Yang, Yun A. Shen, Ryan R. Murray, Kerstin Spirohn, Bridget E. Begg, Miquel Duran-Frigola, Andrew MacWilliams, Samuel J. Pevzner, Quan Zhong, Shelly A. Wanamaker, Stanley Tam, Lila Ghamsari, Nidhi Sahni, Song Yi, Maria D. Rodriguez, Dawit Balcha, Guihong Tan, Michael Costanzo, Brenda Andrews, Charles Boone, Xianghong J. Zhou, Kourosh Salehi-Ashtiani, Benoit Charloteaux, Alyce A. Chen, Michael A. Calderwood, Patrick Aloy, Frederick P. Roth, David E. Hill, Lilia M. Iakoucheva, Yu Xia, Marc Vidal

Cell. Author manuscript; available in PMC 2017 Feb 11.

Published in final edited form as: Cell. 2016 Feb 11; 164(4): 805–817. doi: 10.1016/j.cell.2016.01.029

PMCID:: PMC4882190

Abstract Article PDF–1.9M

Select item 47645734.

A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning

Koray Kırlı, Samir Karaca, Heinz Jürgen Dehne, Matthias Samwer, Kuan Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich

eLife. 2015; 4: e11466. Published online 2015 Dec 17. doi: 10.7554/eLife.11466

PMCID:: PMC4764573

Abstract Article PDF–5.7M

Select item 46875535.

Peptidic degron in EID1 is recognized by an SCF E3 ligase complex containing the orphan F-box protein FBXO21

Cuiyan Zhang, Xiaotong Li, Guillaume Adelmant, Jessica Dobbins, Christoph Geisen, Matthew G. Oser, Kai W. Wucherpfenning, Jarrod A. Marto, William G. Kaelin, Jr.

Proc Natl Acad Sci U S A. 2015 Dec 15; 112(50): 15372–15377. Published online 2015 Dec 2. doi: 10.1073/pnas.1522006112

PMCID:: PMC4687553

Abstract Article PDF–1.4M

Select item 39965376.

Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism

Roser Corominas, Xinping Yang, Guan Ning Lin, Shuli Kang, Yun Shen, Lila Ghamsari, Martin Broly, Maria Rodriguez, Stanley Tam, Shelly A. Wanamaker, Changyu Fan, Song Yi, Murat Tasan, Irma Lemmens, Xingyan Kuang, Nan Zhao, Dheeraj Malhotra, Jacob J. Michaelson, Vladimir Vacic, Michael A. Calderwood, Frederick P. Roth, Jan Tavernier, Steve Horvath, Kourosh Salehi-Ashtiani, Dmitry Korkin, Jonathan Sebat, David E. Hill, Tong Hao, Marc Vidal, Lilia M. Iakoucheva

Nat Commun. 2014; 5: 3650. Published online 2014 Apr 11. doi: 10.1038/ncomms4650

Correction in:: Nat Commun. 2023; 14: 569.

PMCID:: PMC3996537

Abstract Article PDF–1.9M

Select item 38962107.

Structural insights into gene repression by the orphan nuclear receptor SHP

Xiaoyong Zhi, X. Edward Zhou, Yuanzheng He, Christoph Zechner, Kelly M. Suino-Powell, Steven A. Kliewer, Karsten Melcher, David J. Mangelsdorf, H. Eric Xu

Proc Natl Acad Sci U S A. 2014 Jan 14; 111(2): 839–844. Published online 2013 Dec 30. doi: 10.1073/pnas.1322827111

Correction in:: Proc Natl Acad Sci U S A. 2014 Mar 11; 111(10): 3895.

PMCID:: PMC3896210

Abstract Article PDF–1022K

Select item 32767398.

Increased EID1 Nuclear Translocation Impairs Synaptic Plasticity and Memory Function Associated with Pathogenesis of Alzheimer’s disease

Rugao Liu, Joy X Lei, Chun Luo, Xun Lan, Liying Chi, Panyue Deng, Saobo Lei, Othman Ghribi, Qing Yan Liu

Neurobiol Dis. Author manuscript; available in PMC 2013 Mar 1.

Published in final edited form as: Neurobiol Dis. 2012 Mar; 45(3): 902–912. Published online 2011 Dec 11. doi: 10.1016/j.nbd.2011.12.007

PMCID:: PMC3276739

Abstract Article PDF–4.6M

Select item 31780599.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 316943210.

Protein interactome reveals converging molecular pathways among autism disorders

Yasunari Sakai, Chad A. Shaw, Brian C. Dawson, Diana V. Dugas, Zaina Al-Mohtaseb, David E. Hill, Huda Y. Zoghbi

Sci Transl Med. Author manuscript; available in PMC 2011 Dec 8.

Published in final edited form as: Sci Transl Med. 2011 Jun 8; 3(86): 86ra49. doi: 10.1126/scitranslmed.3002166

PMCID:: PMC3169432

Abstract Article PDF–6.0M

Select item 304543611.

Interactions between the Nse3 and Nse4 Components of the SMC5-6 Complex Identify Evolutionarily Conserved Interactions between MAGE and EID Families

Jessica J. R. Hudson, Katerina Bednarova, Lucie Kozakova, Chunyan Liao, Marc Guerineau, Rita Colnaghi, Susanne Vidot, Jaromir Marek, Sreenivas R. Bathula, Alan R. Lehmann, Jan Palecek

PLoS One. 2011; 6(2): e17270. Published online 2011 Feb 25. doi: 10.1371/journal.pone.0017270

PMCID:: PMC3045436

Abstract Article PDF–1.7M

Select item 304485112.

Interactome mapping suggests new mechanistic details underlying Alzheimer's disease

Montserrat Soler-López, Andreas Zanzoni, Ricart Lluís, Ulrich Stelzl, Patrick Aloy

Genome Res. 2011 Mar; 21(3): 364–376. doi: 10.1101/gr.114280.110

PMCID:: PMC3044851

Abstract Article PDF–2.1M

Select item 291572313.

Novel Polymorphisms of Nuclear Receptor SHP Associated with Functional and Structural Changes

Taofeng Zhou, Yuxia Zhang, Antonio Macchiarulo, Zhihong Yang, Marco Cellanetti, Eliecer Coto, Pingyi Xu, Roberto Pellicciari, Li Wang

J Biol Chem. 2010 Aug 6; 285(32): 24871–24881. Published online 2010 Jun 1. doi: 10.1074/jbc.M110.133280

PMCID:: PMC2915723

Abstract Article PDF–2.4M

Select item 115911714.

EID3 is a novel EID family member and an inhibitor of CBP-dependent co-activation

Ann Båvner, Jason Matthews, Sabyasachi Sanyal, Jan-Åke Gustafsson, Eckardt Treuter

Nucleic Acids Res. 2005; 33(11): 3561–3569. Published online 2005 Jun 24. doi: 10.1093/nar/gki667

PMCID:: PMC1159117

Abstract Article PDF–390K

Select item 108410015.

A transcriptional inhibitor targeted by the atypical orphan nuclear receptor SHP

Ann Båvner, Lotta Johansson, Gudrun Toresson, Jan-Åke Gustafsson, Eckardt Treuter

EMBO Rep. 2002 May 15; 3(5): 478–484. doi: 10.1093/embo-reports/kvf087

PMCID:: PMC1084100

Abstract Article PDF–569K

Select item 39108016.

Acetylation regulates the differentiation-specific functions of the retinoblastoma protein

Don X Nguyen, Laurel A Baglia, Shih-Min Huang, Christina M Baker, Dennis J McCance

EMBO J. 2004 Apr 7; 23(7): 1609–1618. Published online 2004 Mar 25. doi: 10.1038/sj.emboj.7600176

PMCID:: PMC391080

Abstract Article PDF–279K

Select item 13924117.

Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences

Mammalian Gene Collection (MGC) Program Team

Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899

PMCID:: PMC139241

Abstract Article PDF–118K

Select item 8654518.

A Novel Rb- and p300-Binding Protein Inhibits Transactivation by MyoD

W. Robb MacLellan, G. Xiao, M. Abdellatif, Michael D. Schneider

Mol Cell Biol. 2000 Dec; 20(23): 8903–8915. doi: 10.1128/mcb.20.23.8903-8915.2000

PMCID:: PMC86545

Abstract Article PDF–1.5M

Select item 8654419.

Cells Degrade a Novel Inhibitor of Differentiation with E1A-Like Properties upon Exiting the Cell Cycle

Satoshi Miyake, William R. Sellers, Michal Safran, Xiaotong Li, Wenqing Zhao, Steven R. Grossman, Jianmin Gan, James A. DeCaprio, Peter D. Adams, William G. Kaelin, Jr.

Mol Cell Biol. 2000 Dec; 20(23): 8889–8902. doi: 10.1128/mcb.20.23.8889-8902.2000

PMCID:: PMC86544

Abstract Article PDF–1.6M

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