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Items: 1 to 20 of 24

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
Xrn1 biochemically associates with eisosome proteins after the post diauxic shift in yeast
Baptiste Courtin, Abdelkader Namane, Maite Gomard, Laura Meyer, Alain Jacquier, Micheline Fromont-Racine
MicroPubl Biol. 2023; 2023: 10.17912/micropub.biology.000926. Published online 2023 Sep 7. doi: 10.17912/micropub.biology.000926
PMCID:
PMC10514700
AbstractArticlePDF–1.7M
3.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Genetic dissection of the mitochondrial lipoylation pathway in yeast
Laura P. Pietikäinen, M. Tanvir Rahman, J. Kalervo Hiltunen, Carol L. Dieckmann, Alexander J. Kastaniotis
BMC Biol. 2021; 19: 14. Published online 2021 Jan 25. doi: 10.1186/s12915-021-00951-3
PMCID:
PMC7831266
AbstractArticlePDF–1.7M
6.
De novo biosynthesis of 8-hydroxyoctanoic acid via a medium-chain length specific fatty acid synthase and cytochrome P450 in Saccharomyces cerevisiae
Florian Wernig, Eckhard Boles, Mislav Oreb
Metab Eng Commun. 2020 Jun; 10: e00111. Published online 2019 Nov 18. doi: 10.1016/j.mec.2019.e00111
PMCID:
PMC6906673
AbstractArticlePDF–872K
7.
ACP acylation is an acetyl-CoA-dependent modification required for electron transport chain assembly
Jonathan G. Van Vranken, Sara M. Nowinski, Katie J. Clowers, Mi-Young Jeong, Yeyun Ouyang, Jordan A. Berg, Jeremy P. Gygi, Steven P. Gygi, Dennis R. Winge, Jared Rutter
Mol Cell. Author manuscript; available in PMC 2019 Aug 16.
Published in final edited form as: Mol Cell. 2018 Aug 16; 71(4): 567–580.e4. doi: 10.1016/j.molcel.2018.06.039
PMCID:
PMC6104058
AbstractArticlePDF–1.1M
8.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
9.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
10.
The m6A methyltransferase Ime4 epitranscriptionally regulates triacylglycerol metabolism and vacuolar morphology in haploid yeast cells
Pradeep Kumar Yadav, Ram Rajasekharan
J Biol Chem. 2017 Aug 18; 292(33): 13727–13744. Published online 2017 Jun 27. doi: 10.1074/jbc.M117.783761
PMCID:
PMC5566527
AbstractArticlePDF–4.8M
11.
A network of conserved synthetic lethal interactions for exploration of precision cancer therapy
Rohith Srivas, John Paul Shen, Chih Cheng Yang, Su Ming Sun, Jianfeng Li, Andrew M. Gross, James Jensen, Katherine Licon, Ana Bojorquez-Gomez, Kristin Klepper, Justin Huang, Daniel Pekin, Jia L. Xu, Huwate Yeerna, Vignesh Sivaganesh, Leonie Kollenstart, Haico van Attikum, Pedro Aza-Blanc, Robert W. Sobol, Trey Ideker
Mol Cell. Author manuscript; available in PMC 2017 Aug 4.
Published in final edited form as: Mol Cell. 2016 Aug 4; 63(3): 514–525. Published online 2016 Jul 21. doi: 10.1016/j.molcel.2016.06.022
PMCID:
PMC5209245
AbstractArticlePDF–1.6M
12.
An inter‐species protein–protein interaction network across vast evolutionary distance
Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal
Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484
PMCID:
PMC4848758
AbstractArticlePDF–2.1M
13.
Expression and Evolution of the Non-Canonically Translated Yeast Mitochondrial Acetyl-CoA Carboxylase Hfa1p
Fumi Suomi, Katja E. Menger, Geoffray Monteuuis, Uta Naumann, V. A. Samuli Kursu, Antonina Shvetsova, Alexander J. Kastaniotis
PLoS One. 2014; 9(12): e114738. Published online 2014 Dec 11. doi: 10.1371/journal.pone.0114738
PMCID:
PMC4263661
AbstractArticlePDF–2.5M
14.
Defects in Mitochondrial Fatty Acid Synthesis Result in Failure of Multiple Aspects of Mitochondrial Biogenesis in Saccharomyces cerevisiae
V. A. Samuli Kursu, Laura P. Pietikäinen, Flavia Fontanesi, Mari J. Aaltonen, Fumi Suomi, Remya Raghavan Nair, Melissa S. Schonauer, Carol L. Dieckmann, Antoni Barrientos, J. Kalervo Hiltunen, Alexander J. Kastaniotis
Mol Microbiol. Author manuscript; available in PMC 2014 Nov 1.
Published in final edited form as: Mol Microbiol. 2013 Nov; 90(4): 824–840. Published online 2013 Oct 10. doi: 10.1111/mmi.12402
PMCID:
PMC4153884
AbstractArticlePDF–3.6M
15.
Involvement of the Carboxyl-Terminal Region of the Yeast Peroxisomal Half ABC Transporter Pxa2p in Its Interaction with Pxa1p and in Transporter Function
Cheng-Yi Chuang, Ling-Yun Chen, Ru-Huei Fu, Shih-Ming Chen, Ming-Hua Ho, Jie-Mau Huang, Chia-Chi Hsu, Chien-Cheng Wang, Meng-Shian Chen, Rong-Tzong Tsai
PLoS One. 2014; 9(8): e104892. Published online 2014 Aug 13. doi: 10.1371/journal.pone.0104892
PMCID:
PMC4132065
AbstractArticlePDF–5.0M
16.
A Global Protein Kinase and Phosphatase Interaction Network in Yeast
Ashton Breitkreutz, Hyungwon Choi, Jeffrey R. Sharom, Lorrie Boucher, Victor Neduva, Brett Larsen, Zhen-Yuan Lin, Bobby-Joe Breitkreutz, Chris Stark, Guomin Liu, Jessica Ahn, Danielle Dewar-Darch, Teresa Reguly, Xiaojing Tang, Ricardo Almeida, Zhaohui Steve Qin, Tony Pawson, Anne-Claude Gingras, Alexey I. Nesvizhskii, Mike Tyers
Science. Author manuscript; available in PMC 2014 Apr 11.
Published in final edited form as: Science. 2010 May 21; 328(5981): 1043–1046. doi: 10.1126/science.1176495
PMCID:
PMC3983991
AbstractArticlePDF–1.4M
17.
Neutral Lipid Metabolism Influences Phospholipid Synthesis and Deacylation in Saccharomyces cerevisiae
Gabriel Mora, Michael Scharnewski, Martin Fulda
PLoS One. 2012; 7(11): e49269. Published online 2012 Nov 5. doi: 10.1371/journal.pone.0049269
PMCID:
PMC3489728
AbstractArticlePDF–532K
18.
Peroxisomal Fatty Acid Uptake Mechanism in Saccharomyces cerevisiae
Carlo W. T. van Roermund, Lodewijk IJlst, Wiktor Majczak, Hans R. Waterham, Hendrik Folkerts, Ronald J. A. Wanders, Klaas J. Hellingwerf
J Biol Chem. 2012 Jun 8; 287(24): 20144–20153. Published online 2012 Apr 9. doi: 10.1074/jbc.M111.332833
PMCID:
PMC3370197
AbstractArticlePDF–1.1M
19.
The nucleotide sequence of Saccharomyces cerevisiae chromosome V
F. S. Dietrich, J. Mulligan, K. Hennessy, M. A. Yelton, E. Allen, R. Araujo, E. Aviles, A. Berno, T. Brennan, J. Carpenter, E. Chen, J. M. Cherry, E. Chung, M. Duncan, E. Guzman, G. Hartzell, S. Hunicke-Smith, R. W. Hyman, A. Kayser, C. Komp, D. Lashkari, H. Lew, D. Lin, D. Mosedale, K. Nakahara, A. Namath, R. Norgren, P. Oefner, C. Oh, F. X. Petel, D. Roberts, P. Sehl, S. Schramm, T. Shogren, V. Smith, P. Taylor, Y. Wei, D. Botstein, R. W. Davis
Nature. Author manuscript; available in PMC 2011 Mar 15.
Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 78–81.
PMCID:
PMC3057095
AbstractArticlePDF–73K
20.
High Quality Binary Protein Interaction Map of the Yeast Interactome Network
Haiyuan Yu, Pascal Braun, Muhammed A. Yildirim, Irma Lemmens, Kavitha Venkatesan, Julie Sahalie, Tomoko Hirozane-Kishikawa, Fana Gebreab, Na Li, Nicolas Simonis, Tong Hao, Jean-Francois Rual, Amélie Dricot, Alexei Vazquez, Ryan R. Murray, Christophe Simon, Leah Tardivo, Stanley Tam, Nenad Svrzikapa, Changyu Fan, Anne-Sophie de Smet, Adriana Motyl, Michael E. Hudson, Juyong Park, Xiaofeng Xin, Michael E. Cusick, Troy Moore, Charlie Boone, Michael Snyder, Frederick P. Roth, Albert-László Barabási, Jan Tavernier, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2009 Sep 18.
Published in final edited form as: Science. 2008 Oct 3; 322(5898): 104–110. Published online 2008 Aug 21. doi: 10.1126/science.1158684
PMCID:
PMC2746753
AbstractArticlePDF–2.2M

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