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Items: 1 to 20 of 58

1.
Dynamic 1D search and processive nucleosome translocations by RSC and ISW2 chromatin remodelers
Jee Min Kim, Claudia C Carcamo, Sina Jazani, Zepei Xie, Xinyu A Feng, Maryam Yamadi, Matthew Poyton, Katie L Holland, Jonathan B Grimm, Luke D Lavis, Taekjip Ha, Carl Wu
eLife. 2024; 12: RP91433. Published online 2024 Mar 18. doi: 10.7554/eLife.91433
PMCID:
PMC10948146
AbstractArticlePDF–7.9M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
4.
ISW1a modulates cohesin distribution in centromeric and pericentromeric regions
Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz
Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612
PMCID:
PMC10516642
AbstractArticlePDF–2.8M
5.
Functional crosstalk between the cohesin loader and chromatin remodelers
Sofía Muñoz, Andrew Jones, Céline Bouchoux, Tegan Gilmore, Harshil Patel, Frank Uhlmann
Nat Commun. 2022; 13: 7698. Published online 2022 Dec 13. doi: 10.1038/s41467-022-35444-6
PMCID:
PMC9744909
AbstractArticlePDF–3.2M
6.
Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress
Michelle Harreman Lehner, Jane Walker, Kotryna Temcinaite, Anna Herlihy, Michael Taschner, Adam C. Berger, Anita H. Corbett, A. Barbara Dirac Svejstrup, Jesper Q. Svejstrup
Cell Rep. 2022 Oct 25; 41(4): 111536. Published online 2022 Oct 25. doi: 10.1016/j.celrep.2022.111536
PMCID:
PMC9638028
AbstractArticle
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
DNA Translocation and Loop Formation Mechanism of Chromatin Remodeling by SWI/SNF and RSC
Yongli Zhang, Corey L. Smith, Anjanabha Saha, Stephan W. Grill, Shirley Mihardja, Steven B. Smith, Bradley R. Cairns, Craig L. Peterson, Carlos Bustamante
Mol Cell. Author manuscript; available in PMC 2022 Apr 23.
Published in final edited form as: Mol Cell. 2006 Nov 17; 24(4): 559–568. doi: 10.1016/j.molcel.2006.10.025
PMCID:
PMC9034902
AbstractArticlePDF–1.3M
9.
Systems-level effects of allosteric perturbations to a model molecular switch
Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme
Nature. Author manuscript; available in PMC 2022 May 1.
Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6
PMCID:
PMC8571063
AbstractArticlePDF–2.7M
10.
Structure of the RSC complex bound to the nucleosome
Youpi Ye, Hao Wu, Kangjing Chen, Cedric R. Clapier, Naveen Verma, Wenhao Zhang, Haiteng Deng, Bradley R. Cairns, Ning Gao, Zhucheng Chen
Science. Author manuscript; available in PMC 2021 Sep 15.
Published in final edited form as: Science. 2019 Nov 15; 366(6467): 838–843. Published online 2019 Oct 31. doi: 10.1126/science.aay0033
PMCID:
PMC8442553
AbstractArticlePDF–1.5M
11.
SUMOylation stabilizes sister kinetochore biorientation to allow timely anaphase
Xue Bessie Su, Menglu Wang, Claudia Schaffner, Olga O. Nerusheva, Dean Clift, Christos Spanos, David A. Kelly, Michael Tatham, Andreas Wallek, Yehui Wu, Juri Rappsilber, A. Arockia Jeyaprakash, Zuzana Storchova, Ronald T. Hay, Adèle L. Marston
J Cell Biol. 2021 Jul 5; 220(7): e202005130. Published online 2021 Apr 30. doi: 10.1083/jcb.202005130
PMCID:
PMC8094117
AbstractArticlePDF–8.1M
12.
Purified Smc5/6 Complex Exhibits DNA Substrate Recognition and Compaction
Pilar Gutierrez-Escribano, Silvia Hormeño, Julene Madariaga-Marcos, Roger Solé-Soler, Francis J. O’Reilly, Kyle Morris, Clara Aicart-Ramos, Ricardo Aramayo, Alex Montoya, Holger Kramer, Juri Rappsilber, Jordi Torres-Rosell, Fernando Moreno-Herrero, Luis Aragon
Mol Cell. 2020 Dec 17; 80(6): 1039–1054.e6. doi: 10.1016/j.molcel.2020.11.012
PMCID:
PMC7758880
AbstractArticle
13.
Specialization of the chromatin remodeler RSC to mobilize partially-unwrapped nucleosomes
Alisha Schlichter, Margaret M Kasten, Timothy J Parnell, Bradley R Cairns
eLife. 2020; 9: e58130. Published online 2020 Jun 4. doi: 10.7554/eLife.58130
PMCID:
PMC7308085
AbstractArticlePDF–5.9M
14.
Structure of SWI/SNF chromatin remodeler RSC bound to a nucleosome
Felix R. Wagner, Christian Dienemann, Haibo Wang, Alexandra Stützer, Dimitry Tegunov, Henning Urlaub, Patrick Cramer
Nature. Author manuscript; available in PMC 2020 Sep 11.
Published in final edited form as: Nature. 2020 Mar; 579(7799): 448–451. Published online 2020 Mar 11. doi: 10.1038/s41586-020-2088-0
PMCID:
PMC7093204
AbstractArticlePDF–5.5M
15.
Architecture of the chromatin remodeler RSC and insights into its nucleosome engagement
Avinash B Patel, Camille M Moore, Basil J Greber, Jie Luo, Stefan A Zukin, Jeff Ranish, Eva Nogales
eLife. 2019; 8: e54449. Published online 2019 Dec 30. doi: 10.7554/eLife.54449
PMCID:
PMC6959994
AbstractArticlePDF–5.9M
16.
Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response
Matthew E. MacGilvray, Evgenia Shishkova, Deborah Chasman, Michael Place, Anthony Gitter, Joshua J. Coon, Audrey P. Gasch
PLoS Comput Biol. 2018 May; 13(5): e1006088. Published online 2018 May 8. doi: 10.1371/journal.pcbi.1006088
PMCID:
PMC5940180
AbstractArticlePDF–3.0M
17.
Widespread and precise reprogramming of yeast protein–genome interactions in response to heat shock
Vinesh Vinayachandran, Rohit Reja, Matthew J. Rossi, Bongsoo Park, Lila Rieber, Chitvan Mittal, Shaun Mahony, B. Franklin Pugh
Genome Res. 2018 Mar; 28(3): 357–366. doi: 10.1101/gr.226761.117
PMCID:
PMC5848614
AbstractArticlePDF–25M
18.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
19.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
20.
TORC1-dependent sumoylation of Rpc82 promotes RNA polymerase III assembly and activity
Pierre Chymkowitch, Aurélie Nguéa P, Håvard Aanes, Joseph Robertson, Arne Klungland, Jorrit M. Enserink
Proc Natl Acad Sci U S A. 2017 Jan 31; 114(5): 1039–1044. Published online 2017 Jan 17. doi: 10.1073/pnas.1615093114
PMCID:
PMC5293095
AbstractArticlePDF–1.0M

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