PMC Links for GEO Profiles (Select 9087129) - PMC

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 96296215.

Comprehensive characterization of the Hsp70 interactome reveals novel client proteins and interactions mediated by posttranslational modifications

Nitika, Bo Zheng, Linhao Ruan, Jake T. Kline, Siddhi Omkar, Jacek Sikora, Mara Texeira Torres, Yuhao Wang, Jade E. Takakuwa, Romain Huguet, Cinzia Klemm, Verónica A. Segarra, Matthew J. Winters, Peter M. Pryciak, Peter H. Thorpe, Kazuo Tatebayashi, Rong Li, Luca Fornelli, Andrew W. Truman

PLoS Biol. 2022 Oct; 20(10): e3001839. Published online 2022 Oct 21. doi: 10.1371/journal.pbio.3001839

PMCID:: PMC9629621

Abstract Article PDF–3.4M

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 85710637.

Systems-level effects of allosteric perturbations to a model molecular switch

Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme

Nature. Author manuscript; available in PMC 2022 May 1.

Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6

PMCID:: PMC8571063

Abstract Article PDF–2.7M

Select item 85516548.

Replication stress inhibits synthesis of histone mRNAs in yeast by removing Spt10p and Spt21p from the histone promoters

Madhura Bhagwat, Shreya Nagar, Pritpal Kaur, Riddhi Mehta, Ivana Vancurova, Ales Vancura

J Biol Chem. 2021 Nov; 297(5): 101246. Published online 2021 Sep 25. doi: 10.1016/j.jbc.2021.101246

PMCID:: PMC8551654

Abstract Article PDF–3.5M

Select item 77187519.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 727317710.

Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions

Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch

Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680

PMCID:: PMC7273177

Abstract Article

Select item 675736111.

Histone chaperones and the Rrm3p helicase regulate flocculation in S. cerevisiae

Hollie Rowlands, Kholoud Shaban, Barret Foster, Yannic Proteau, Krassimir Yankulov

Epigenetics Chromatin. 2019; 12: 56. Published online 2019 Sep 23. doi: 10.1186/s13072-019-0303-8

PMCID:: PMC6757361

Abstract Article PDF–1.7M

Select item 662009212.

Cellular response to moderate chromatin architectural defects promotes longevity

Ruofan Yu, Luyang Sun, Yu Sun, Xin Han, Lidong Qin, Weiwei Dang

Sci Adv. 2019 Jul; 5(7): eaav1165. Published online 2019 Jul 10. doi: 10.1126/sciadv.aav1165

PMCID:: PMC6620092

Abstract Article PDF–729K

Select item 659784013.

DNA damage response activates respiration and thereby enlarges dNTP pools to promote cell survival in budding yeast

Pengli Bu, Shreya Nagar, Madhura Bhagwat, Pritpal Kaur, Ankita Shah, Joey Zeng, Ivana Vancurova, Ales Vancura

J Biol Chem. 2019 Jun 21; 294(25): 9771–9786. Published online 2019 May 9. doi: 10.1074/jbc.RA118.007266

PMCID:: PMC6597840

Abstract Article PDF–6.4M

Select item 652169714.

A Chemogenomic Screening Platform Used to Identify Chemotypes Perturbing HSP90 Pathways

Fiona M. Thomas, Kourtney M. Goode, Bartek Rajwa, Andrew A. Bieberich, Larisa V. Avramova, Tony R. Hazbun, V. Jo Davisson

SLAS Discov. Author manuscript; available in PMC 2019 May 16.

Published in final edited form as: SLAS Discov. 2017 Jul; 22(6): 706–719. Published online 2017 Jan 31. doi: 10.1177/2472555216687525

PMCID:: PMC6521697

Abstract Article PDF–1.6M

Select item 646830215.

Set1-catalyzed H3K4 trimethylation antagonizes the HIR/Asf1/Rtt106 repressor complex to promote histone gene expression and chronological life span

Qianyun Mei, Chen Xu, Madelaine Gogol, Jie Tang, Wanping Chen, Xilan Yu, Jerry L Workman, Shanshan Li

Nucleic Acids Res. 2019 Apr 23; 47(7): 3434–3449. Published online 2019 Feb 13. doi: 10.1093/nar/gkz101

PMCID:: PMC6468302

Abstract Article PDF–3.3M

Select item 621571316.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 611694917.

A Genome-Wide Screen Reveals a Role for the HIR Histone Chaperone Complex in Preventing Mislocalization of Budding Yeast CENP-A

Sultan Ciftci-Yilmaz, Wei-Chun Au, Prashant K. Mishra, Jessica R. Eisenstatt, Joy Chang, Anthony R. Dawson, Iris Zhu, Mahfuzur Rahman, Sven Bilke, Michael Costanzo, Anastasia Baryshnikova, Chad L. Myers, Paul S. Meltzer, David Landsman, Richard E. Baker, Charles Boone, Munira A. Basrai

Genetics. 2018 Sep; 210(1): 203–218. Published online 2018 Jul 16. doi: 10.1534/genetics.118.301305

PMCID:: PMC6116949

Abstract Article PDF–2.1M

Select item 596102018.

Chromatin assembly factor-1 (CAF-1) chaperone regulates Cse4 deposition into chromatin in budding yeast

Geetha S Hewawasam, Karthik Dhatchinamoorthy, Mark Mattingly, Chris Seidel, Jennifer L Gerton

Nucleic Acids Res. 2018 May 18; 46(9): 4440–4455. Published online 2018 Mar 7. doi: 10.1093/nar/gky169

Correction in:: Nucleic Acids Res. 2018 May 18; 46(9): 4831.

PMCID:: PMC5961020

Abstract Article PDF–2.1M

Select item 586140019.

The elongation factor Spn1 is a multi-functional chromatin binding protein

Sha Li, Adam R Almeida, Catherine A Radebaugh, Ling Zhang, Xu Chen, Liangqun Huang, Alison K Thurston, Anna A Kalashnikova, Jeffrey C Hansen, Karolin Luger, Laurie A Stargell

Nucleic Acids Res. 2018 Mar 16; 46(5): 2321–2334. Published online 2017 Dec 30. doi: 10.1093/nar/gkx1305

PMCID:: PMC5861400

Abstract Article PDF–4.5M

Select item 575387320.

Protein Moonlighting Revealed by Noncatalytic Phenotypes of Yeast Enzymes

Adriana Espinosa-Cantú, Diana Ascencio, Selene Herrera-Basurto, Jiewei Xu, Assen Roguev, Nevan J. Krogan, Alexander DeLuna

Genetics. 2018 Jan; 208(1): 419–431. Published online 2017 Nov 10. doi: 10.1534/genetics.117.300377

PMCID:: PMC5753873

Abstract Article PDF–1.5M

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