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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 106476993.

A Protein–Protein Interaction Analysis Suggests a Wide Range of New Functions for the p21-Activated Kinase (PAK) Ste20

Ifeoluwapo Matthew Joshua, Meng Lin, Ariestia Mardjuki, Alessandra Mazzola, Thomas Höfken

Int J Mol Sci. 2023 Nov; 24(21): 15916. Published online 2023 Nov 2. doi: 10.3390/ijms242115916

PMCID:: PMC10647699

Abstract Article PDF–5.4M

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 73517665.

Cryo-EM structure of catalytic ribonucleoprotein complex RNase MRP

Anna Perederina, Di Li, Hyunwook Lee, Carol Bator, Igor Berezin, Susan L. Hafenstein, Andrey S. Krasilnikov

Nat Commun. 2020; 11: 3474. Published online 2020 Jul 10. doi: 10.1038/s41467-020-17308-z

PMCID:: PMC7351766

Abstract Article PDF–3.7M

Select item 60618746.

In vitro reconstitution and analysis of eukaryotic RNase P RNPs

Anna Perederina, Igor Berezin, Andrey S Krasilnikov

Nucleic Acids Res. 2018 Jul 27; 46(13): 6857–6868. Published online 2018 May 2. doi: 10.1093/nar/gky333

PMCID:: PMC6061874

Abstract Article PDF–2.1M

Select item 58296437.

Structural and functional analysis of ribosome assembly factor Efg1

Sheng Shu, Keqiong Ye

Nucleic Acids Res. 2018 Feb 28; 46(4): 2096–2106. Published online 2018 Jan 18. doi: 10.1093/nar/gky011

PMCID:: PMC5829643

Abstract Article PDF–7.8M

Select item 56480328.

Architecture and dynamics of overlapped RNA regulatory networks

Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens

RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117

PMCID:: PMC5648032

Abstract Article PDF–6.6M

Select item 47079529.

Protein-RNA networks revealed through covalent RNA marks

Christopher P. Lapointe, Daniel Wilinski, Harriet A. J. Saunders, Marvin Wickens

Nat Methods. Author manuscript; available in PMC 2016 May 18.

Published in final edited form as: Nat Methods. 2015 Dec; 12(12): 1163–1170. Published online 2015 Nov 2. doi: 10.1038/nmeth.3651

PMCID:: PMC4707952

Abstract Article PDF–856K

Select item 461603910.

Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p

Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt

Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518

PMCID:: PMC4616039

Abstract Article PDF–2.2M

Select item 356498711.

Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork

Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter

G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754

PMCID:: PMC3564987

Abstract Article PDF–2.3M

Select item 348955612.

The nuclear localization of SWI/SNF proteins is subjected to oxygen regulation

Ranita Ghosh Dastidar, Jagmohan Hooda, Ajit Shah, Thai M Cao, Robert Michael Henke, Li Zhang

Cell Biosci. 2012; 2: 30. Published online 2012 Aug 29. doi: 10.1186/2045-3701-2-30

PMCID:: PMC3489556

Abstract Article PDF–2.4M

Select item 331255913.

Structural organizations of yeast RNase P and RNase MRP holoenzymes as revealed by UV-crosslinking studies of RNA–protein interactions

Elena Khanova, Olga Esakova, Anna Perederina, Igor Berezin, Andrey S. Krasilnikov

RNA. 2012 Apr; 18(4): 720–728. doi: 10.1261/rna.030874.111

PMCID:: PMC3312559

Abstract Article PDF–1.4M

Select item 315396914.

Accumulation of noncoding RNA due to an RNase P defect in Saccharomyces cerevisiae

Michael C. Marvin, Sandra Clauder-Münster, Scott C. Walker, Ali Sarkeshik, John R. Yates, III, Lars M. Steinmetz, David R. Engelke

RNA. 2011 Aug; 17(8): 1441–1450. doi: 10.1261/rna.2737511

PMCID:: PMC3153969

Abstract Article PDF–890K

Select item 315396815.

Binding and cleavage of unstructured RNA by nuclear RNase P

Michael C. Marvin, Scott C. Walker, Carol A. Fierke, David R. Engelke

RNA. 2011 Aug; 17(8): 1429–1440. doi: 10.1261/rna.2633611

PMCID:: PMC3153968

Abstract Article PDF–938K

Select item 309130116.

Defining potentially conserved RNA regulons of homologous zinc-finger RNA-binding proteins

Tanja Scherrer, Christian Femmer, Ralph Schiess, Ruedi Aebersold, André P Gerber

Genome Biol. 2011; 12(1): R3. Published online 2011 Jan 13. doi: 10.1186/gb-2011-12-1-r3

PMCID:: PMC3091301

Abstract Article PDF–1.3M

Select item 308421317.

The Complete Spectrum of Yeast Chromosome Instability Genes Identifies Candidate CIN Cancer Genes and Functional Roles for ASTRA Complex Components

Peter C. Stirling, Michelle S. Bloom, Tejomayee Solanki-Patil, Stephanie Smith, Payal Sipahimalani, Zhijian Li, Megan Kofoed, Shay Ben-Aroya, Kyungjae Myung, Philip Hieter

PLoS Genet. 2011 Apr; 7(4): e1002057. Published online 2011 Apr 28. doi: 10.1371/journal.pgen.1002057

PMCID:: PMC3084213

Abstract Article PDF–710K

Select item 282291818.

Comparison of mitochondrial and nucleolar RNase MRP reveals identical RNA components with distinct enzymatic activities and protein components

Qiaosheng Lu, Sara Wierzbicki, Andrey S. Krasilnikov, Mark E. Schmitt

RNA. 2010 Mar; 16(3): 529–537. doi: 10.1261/rna.1893710

PMCID:: PMC2822918

Abstract Article PDF–528K

Select item 264870919.

Pre-tRNA turnover catalyzed by the yeast nuclear RNase P holoenzyme is limited by product release

John Hsieh, Scott C. Walker, Carol A. Fierke, David R. Engelke

RNA. 2009 Feb; 15(2): 224–234. doi: 10.1261/rna.1309409

PMCID:: PMC2648709

Abstract Article PDF–863K

Select item 264472420.

A Genetic Interaction Map of RNA Processing Factors Reveals Links Between Sem1/Dss1-Containing Complexes and mRNA Export and Splicing

Gwendolyn M. Wilmes, Megan Bergkessel, Sourav Bandyopadhyay, Michael Shales, Hannes Braberg, Gerard Cagney, Sean R. Collins, Gregg B. Whitworth, Tracy L. Kress, Jonathan S. Weissman, Trey Ideker, Christine Guthrie, Nevan J. Krogan

Mol Cell. Author manuscript; available in PMC 2009 Dec 5.

Published in final edited form as: Mol Cell. 2008 Dec 5; 32(5): 735–746. doi: 10.1016/j.molcel.2008.11.012