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Select item 114472561.

Cell fixation improves performance of in situ crosslinking mass spectrometry while preserving cellular ultrastructure

Andrew R. M. Michael, Bruno C. Amaral, Kallie L. Ball, Kristen H. Eiriksson, David C. Schriemer

Nat Commun. 2024; 15: 8537. Published online 2024 Oct 2. doi: 10.1038/s41467-024-52844-y

PMCID:: PMC11447256

Abstract Article PDF–2.8M

Select item 111088042.

CERKL-Associated Retinal Dystrophy: Genetics, Phenotype, and Natural History

Malena Daich Varela, Emma S. Duignan, Samantha R. De Silva, Rola Ba-Abbad, Yu Fujinami-Yokokawa, Shaun Leo, Kaoru Fujinami, Omar A. Mahroo, Anthony G. Robson, Andrew R. Webster, Michel Michaelides

Ophthalmol Retina. 2023 Oct; 7(10): 918–931. doi: 10.1016/j.oret.2023.06.007

PMCID:: PMC11108804

Abstract Article PDF–3.0M

Select item 108841553.

RFX4 is an intrinsic factor for neuronal differentiation through induction of proneural genes POU3F2 and NEUROD1

Wonyoung Choi, Mu Seog Choe, Su Min Kim, So Jin Kim, Jiyeon Lee, Yeongun Lee, Sun-Min Lee, So Hee Dho, Min-Young Lee, Lark Kyun Kim

Cell Mol Life Sci. 2024 Dec; 81(1): 99. Published online 2024 Feb 22. doi: 10.1007/s00018-024-05129-y

PMCID:: PMC10884155

Abstract Article PDF–6.0M

Select item 106599204.

Promoter-Specific Variants in NeuroD1 and H3K4me3 Coincident Regions and Clinical Outcomes of Small Cell Lung Cancer

Seung Soo Yoo, Sunwoong Lee, Jin Eun Choi, Mi Jeong Hong, Sook Kyung Do, Jang Hyuck Lee, Won Kee Lee, Ji Eun Park, Yong Hoon Lee, Sun Ha Choi, Hyewon Seo, Jaehee Lee, Shin Yup Lee, Seung Ick Cha, Chang Ho Kim, Hyo-Gyoung Kang, Jae Yong Park

J Korean Med Sci. 2023 Nov 20; 38(45): e381. Published online 2023 Nov 7. doi: 10.3346/jkms.2023.38.e381

PMCID:: PMC10659920

Abstract Article PDF–2.4M

Select item 101511375.

Genetic variants of NEUROD1 target genes are associated with clinical outcomes of small‐cell lung cancer patients

Sunwoong Lee, Seung Soo Yoo, Jin Eun Choi, Mi Jeong Hong, Sook Kyung Do, Jang Hyuck Lee, Won Ki Lee, Ji Eun Park, Sun Ha Choi, Hyewon Seo, Jaehee Lee, Shin Yup Lee, Seung Ick Cha, Chang Ho Kim, Hyo‐Gyoung Kang, Jae Yong Park

Thorac Cancer. 2023 May; 14(13): 1145–1152. Published online 2023 Mar 19. doi: 10.1111/1759-7714.14839

PMCID:: PMC10151137

Abstract Article PDF–1.5M

Select item 95701436.

CERKL, a Retinal Dystrophy Gene, Regulates Mitochondrial Transport and Dynamics in Hippocampal Neurons

Rocío García-Arroyo, Gemma Marfany, Serena Mirra

Int J Mol Sci. 2022 Oct; 23(19): 11593. Published online 2022 Sep 30. doi: 10.3390/ijms231911593

PMCID:: PMC9570143

Abstract Article PDF–3.5M

Select item 86876587.

Altered temporal sequence of transcriptional regulators in the generation of human cerebellar granule cells

Hourinaz Behesti, Arif Kocabas, David E Buchholz, Thomas S Carroll, Mary E Hatten

eLife. 2021; 10: e67074. Published online 2021 Nov 29. doi: 10.7554/eLife.67074

PMCID:: PMC8687658

Abstract Article PDF–6.5M

Select item 85183228.

NEUROD1 mutation in an Italian patient with maturity onset diabetes of the young 6: a case report

Lucia Brodosi, Bianca Baracco, Vilma Mantovani, Loris Pironi

BMC Endocr Disord. 2021; 21: 202. Published online 2021 Oct 15. doi: 10.1186/s12902-021-00864-w

PMCID:: PMC8518322

Abstract Article PDF–915K

Select item 83627979.

Small Cell Lung Carcinoma Subtypes Defined by ASCL1, NEUROD1, POU2F3 and YAP1: Comprehensive Immunohistochemical and Histopathologic Characterization

Marina K Baine, Min-Shu Hsieh, W. Victoria Lai, Jacklynn V. Egger, Achim Jungbluth, Yahya Daneshbod, Amanda Beras, Rowanne Spencer, Jessica Lopardo, Francis Bodd, Joseph Montecalvo, Jennifer L. Sauter, Jason C. Chang, Darren J. Buonocore, William D. Travis, Triparna Sen, John T. Poirier, Charles M. Rudin, Natasha Rekhtman

J Thorac Oncol. Author manuscript; available in PMC 2021 Dec 1.

Published in final edited form as: J Thorac Oncol. 2020 Dec; 15(12): 1823–1835. Published online 2020 Oct 1. doi: 10.1016/j.jtho.2020.09.009

PMCID:: PMC8362797

Abstract Article PDF–1.8M

Select item 816503010.

Dual Proteome-scale Networks Reveal Cell-specific Remodeling of the Human Interactome

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 804593211.

A novel p53 regulator, C16ORF72/TAPR1, buffers against telomerase inhibition

Yahya Benslimane, María Sánchez‐Osuna, Jasmin Coulombe‐Huntington, Thierry Bertomeu, Danielle Henry, Caroline Huard, Éric Bonneil, Pierre Thibault, Mike Tyers, Lea Harrington

Aging Cell. 2021 Apr; 20(4): e13331. Published online 2021 Mar 4. doi: 10.1111/acel.13331

PMCID:: PMC8045932

Abstract Article PDF–1.9M

Select item 800904812.

Impact of cytosine methylation on DNA binding specificities of human transcription factors

Yimeng Yin, Ekaterina Morgunova, Arttu Jolma, Eevi Kaasinen, Biswajyoti Sahu, Syed Khund-Sayeed, Pratyush K. Das, Teemu Kivioja, Kashyap Dave, Fan Zhong, Kazuhiro R. Nitta, Minna Taipale, Alexander Popov, Paul A. Ginno, Silvia Domcke, Jian Yan, Dirk Schübeler, Charles Vinson, Jussi Taipale

Science. Author manuscript; available in PMC 2021 Mar 30.

Published in final edited form as: Science. 2017 May 5; 356(6337): eaaj2239. doi: 10.1126/science.aaj2239

PMCID:: PMC8009048

Abstract Article PDF–2.6M

Select item 777250913.

NEUROD1 Intrinsically Initiates Differentiation of Induced Pluripotent Stem Cells into Neural Progenitor Cells

Won-Young Choi, Ji-Hyun Hwang, Ann-Na Cho, Andrew J. Lee, Inkyung Jung, Seung-Woo Cho, Lark Kyun Kim, Young-Joon Kim

Mol Cells. 2020 Dec 31; 43(12): 1011–1022. Published online 2020 Dec 9. doi: 10.14348/molcells.2020.0207

PMCID:: PMC7772509

Abstract Article PDF–1.5M

Select item 776396114.

Genetic and Clinical Findings in an Ethnically Diverse Cohort with Retinitis Pigmentosa Associated with Pathogenic Variants in CERKL

Susan M. Downes, Tham Nguyen, Vicky Tai, Suzanne Broadgate, Mital Shah, Saoud Al-Khuzaei, Robert E. MacLaren, Morag Shanks, Penny Clouston, Stephanie Halford

Genes (Basel) 2020 Dec; 11(12): 1497. Published online 2020 Dec 12. doi: 10.3390/genes11121497

PMCID:: PMC7763961

Abstract Article PDF–844K

Select item 716998315.

A reference map of the human binary protein interactome

Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood

Nature. Author manuscript; available in PMC 2020 Oct 8.

Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x

PMCID:: PMC7169983

Abstract Article PDF–5.4M

Select item 694242616.

Neurogenic differentiation factor 1 promotes colorectal cancer cell proliferation and tumorigenesis by suppressing the p53/p21 axis

Ke Lei, Wenfang Li, Can Huang, Yanjun Li, Leader Alfason, Hezhao Zhao, Makoto Miyagishi, Shourong Wu, Vivi Kasim

Cancer Sci. 2020 Jan; 111(1): 175–185. Published online 2019 Dec 10. doi: 10.1111/cas.14233

PMCID:: PMC6942426

Abstract Article PDF–1.8M

Select item 686847217.

Murine Perinatal β-Cell Proliferation and the Differentiation of Human Stem Cell–Derived Insulin-Expressing Cells Require NEUROD1

Anthony I. Romer, Ruth A. Singer, Lina Sui, Dieter Egli, Lori Sussel

Diabetes. 2019 Dec; 68(12): 2259–2271. Published online 2019 Sep 13. doi: 10.2337/db19-0117

PMCID:: PMC6868472

Abstract Article PDF–2.4M

Select item 635113018.

CERKL regulates autophagy via the NAD-dependent deacetylase SIRT1

Xuebin Hu, Zhaojing Lu, Shanshan Yu, James Reilly, Fei Liu, Danna Jia, Yayun Qin, Shanshan Han, Xiliang Liu, Zhen Qu, Yuexia Lv, Jingzhen Li, Yuwen Huang, Tao Jiang, Haibo Jia, Qing Wang, Jingyu Liu, Xinhua Shu, Zhaohui Tang, Mugen Liu

Autophagy. 2019; 15(3): 453–465. Published online 2018 Sep 25. doi: 10.1080/15548627.2018.1520548

PMCID:: PMC6351130

Abstract Article PDF–2.7M

Select item 554573219.

The early growth response protein 1-miR-30a-5p-neurogenic differentiation factor 1 axis as a novel biomarker for schizophrenia diagnosis and treatment monitoring

S Liu, F Zhang, Y Y Shugart, L Yang, X Li, Z Liu, N Sun, C Yang, X Guo, J Shi, L Wang, L Cheng, K Zhang, T Yang, Y Xu

Transl Psychiatry. 2017 Jan; 7(1): e998. Published online 2017 Jan 10. doi: 10.1038/tp.2016.268

PMCID:: PMC5545732

Abstract Article PDF–580K

Select item 553161120.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

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