PMC Links for GEO Profiles (Select 91461502) - PMC

Select item 94378481.

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans

Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono

J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343

PMCID:: PMC9437848

Abstract Article PDF–2.0M

Select item 93880982.

trim-21 promotes proteasomal degradation of CED-1 for apoptotic cell clearance in C. elegans

Lei Yuan, Peiyao Li, Huiru Jing, Qian Zheng, Hui Xiao

eLife. 2022; 11: e76436. Published online 2022 Aug 5. doi: 10.7554/eLife.76436

PMCID:: PMC9388098

Abstract Article PDF–17M

Select item 84467933.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Abstract Article PDF–1.6M

Select item 83576314.

Rewiring of the ubiquitinated proteome determines ageing in C. elegans

Seda Koyuncu, Rute Loureiro, Hyun Ju Lee, Prerana Wagle, Marcus Krueger, David Vilchez

Nature. 2021; 596(7871): 285–290. Published online 2021 Jul 28. doi: 10.1038/s41586-021-03781-z

Correction in:: Nature. 2024; 626(8001): E20.

PMCID:: PMC8357631

Abstract Article PDF–9.2M

Select item 83311835.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 79951766.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 79573987.

The UBA domain of conjugating enzyme Ubc1/Ube2K facilitates assembly of K48/K63‐branched ubiquitin chains

Lukas Pluska, Ernst Jarosch, Henrik Zauber, Andreas Kniss, Anita Waltho, Katrin Bagola, Maximilian von Delbrück, Frank Löhr, Brenda A Schulman, Matthias Selbach, Volker Dötsch, Thomas Sommer

EMBO J. 2021 Mar 15; 40(6): e106094. Published online 2021 Feb 12. doi: 10.15252/embj.2020106094

PMCID:: PMC7957398

Abstract Article PDF–2.9M

Select item 68261458.

The conserved histone chaperone LIN‐53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans

Stefanie Müthel, Bora Uyar, Mei He, Anne Krause, Burcu Vitrinel, Selman Bulut, Djordje Vasiljevic, Iris Marchal, Stefan Kempa, Altuna Akalin, Baris Tursun

Aging Cell. 2019 Dec; 18(6): e13012. Published online 2019 Aug 9. doi: 10.1111/acel.13012

PMCID:: PMC6826145

Abstract Article PDF–3.0M

Select item 63551989.

SUMO peptidase ULP-4 regulates mitochondrial UPR-mediated innate immunity and lifespan extension

Kaiyu Gao, Yi Li, Shumei Hu, Ying Liu

eLife. 2019; 8: e41792. Published online 2019 Jan 15. doi: 10.7554/eLife.41792

PMCID:: PMC6355198

Abstract Article PDF–3.6M

Select item 621659010.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 478159711.

Ubiquitin-mediated pathways in C. elegans.

Edward T Kipreos

WormBook. 2005 : 1–24. Published online 2005 Dec 1. doi: 10.1895/wormbook.1.36.1

PMCID:: PMC4781597

Abstract Article

Select item 424594612.

Functional characterization of C. elegans Y-box-binding proteins reveals tissue-specific functions and a critical role in the formation of polysomes

Andreas Arnold, Md Masuder Rahman, Man Chun Lee, Sandra Muehlhaeusser, Iskra Katic, Dimos Gaidatzis, Daniel Hess, Claudia Scheckel, Jane E. Wright, Attila Stetak, Peter R. Boag, Rafal Ciosk

Nucleic Acids Res. 2014 Dec 1; 42(21): 13353–13369. Published online 2014 Nov 5. doi: 10.1093/nar/gku1077

PMCID:: PMC4245946

Abstract Article PDF–1.8M

Select item 337136113.

The Caenorhabditis elegans RDE-10/RDE-11 complex regulates RNAi by promoting secondary siRNA amplification

Chi Zhang, Taiowa A. Montgomery, Sylvia E. J. Fischer, Susana M. D. A. Garcia, Christian G. Riedel, Noah Fahlgren, Christopher M. Sullivan, James C. Carrington, Gary Ruvkun

Curr Biol. Author manuscript; available in PMC 2013 May 22.

Published in final edited form as: Curr Biol. 2012 May 22; 22(10): 881–890. Published online 2012 Apr 26. doi: 10.1016/j.cub.2012.04.011

PMCID:: PMC3371361

Abstract Article PDF–1.8M

Select item 310207714.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 169894915.

A Map of the Interactome Network of the Metazoan C. elegans

Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal

Science. Author manuscript; available in PMC 2006 Dec 14.

Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403

PMCID:: PMC1698949

Abstract Article PDF–1.4M

Select item 35585016.

Anaphase-Promoting Complex in Caenorhabditis elegans

Foong May Yeong

Mol Cell Biol. 2004 Mar; 24(6): 2215–2225. doi: 10.1128/MCB.24.6.2215-2225.2004

PMCID:: PMC355850

Article PDF–329K

Select item 9466217.

Identification of Escherichia coli ubiB, a Gene Required for the First Monooxygenase Step in Ubiquinone Biosynthesis

Wayne W. Poon, Diana E. Davis, Huan T. Ha, Tanya Jonassen, Philip N. Rather, Catherine F. Clarke

J Bacteriol. 2000 Sep; 182(18): 5139–5146. doi: 10.1128/jb.182.18.5139-5146.2000

PMCID:: PMC94662

Abstract Article PDF–143K

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