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Items: 1 to 20 of 81

1.
Accurate and sensitive interactome profiling using a quantitative protein-fragment complementation assay
Natalia Lazarewicz, Gaëlle Le Dez, Romina Cerjani, Lunelys Runeshaw, Matthias Meurer, Michael Knop, Robert Wysocki, Gwenaël Rabut
Cell Rep Methods. 2024 Oct 21; 4(10): 100880. Published online 2024 Oct 21. doi: 10.1016/j.crmeth.2024.100880
PMCID:
PMC11573789
AbstractArticlePDF–4.0M
2.
K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors
Anita Waltho, Oliver Popp, Christopher Lenz, Lukas Pluska, Mahil Lambert, Volker Dötsch, Philipp Mertins, Thomas Sommer
Life Sci Alliance. 2024 Aug; 7(8): e202402740. Published online 2024 May 21. doi: 10.26508/lsa.202402740
PMCID:
PMC11109483
AbstractArticlePDF–2.9M
3.
The derlin Dfm1 couples retrotranslocation of a folded protein domain to its proteasomal degradation
Daniela G. Vitali, Daniel Fonseca, Pedro Carvalho
J Cell Biol. 2024 May 6; 223(5): e202308074. Published online 2024 Mar 5. doi: 10.1083/jcb.202308074
PMCID:
PMC11066878
AbstractArticlePDF–4.8M
4.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
5.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
6.
Misregulation of cell cycle-dependent methylation of budding yeast CENP-A contributes to chromosomal instability
Prashant K. Mishra, Wei-Chun Au, Pedro G. Castineira, Nazrin Ali, John Stanton, Lars Boeckmann, Yoshimitsu Takahashi, Michael Costanzo, Charles Boone, Kerry S. Bloom, Peter H. Thorpe, Munira A. Basrai
Mol Biol Cell. 2023 Sep 1; 34(10): ar99. Published online 2023 Aug 17. doi: 10.1091/mbc.E23-03-0108
PMCID:
PMC10551700
AbstractArticlePDF–3.7M
7.
The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
PMCID:
PMC10297700
AbstractArticlePDF–2.0M
8.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
9.
The Ufd1 cofactor determines the linkage specificity of polyubiquitin chain engagement by the AAA+ ATPase Cdc48
Cameron Williams, Ken C Dong, Connor Arkinson, Andreas Martin
Mol Cell. Author manuscript; available in PMC 2024 Mar 2.
Published in final edited form as: Mol Cell. 2023 Mar 2; 83(5): 759–769.e7. Published online 2023 Feb 2. doi: 10.1016/j.molcel.2023.01.016
PMCID:
PMC9992269
AbstractArticlePDF–1.3M
10.
SUMO enhances unfolding of SUMO–polyubiquitin-modified substrates by the Ufd1/Npl4/Cdc48 complex
Hyein G. Lee, Abigail A. Lemmon, Christopher D. Lima
Proc Natl Acad Sci U S A. 2023 Jan 3; 120(1): e2213703120. Published online 2022 Dec 27. doi: 10.1073/pnas.2213703120
PMCID:
PMC9910466
AbstractArticlePDF–3.2M
11.
Analysis of a degron-containing reporter protein GFP-CL1 reveals a role for SUMO1 in cytosolic protein quality control
Wei Wang, Jian Lu, Wei-Chih Yang, Eric D. Spear, Susan Michaelis, Michael J. Matunis
J Biol Chem. 2023 Feb; 299(2): 102851. Published online 2022 Dec 29. doi: 10.1016/j.jbc.2022.102851
PMCID:
PMC9898758
AbstractArticlePDF–3.7M
12.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
13.
Cdc48Ufd1/Npl4 segregase removes mislocalized centromeric histone H3 variant CENP-A from non-centromeric chromatin
Kentaro Ohkuni, Loran Gliford, Wei-Chun Au, Evelyn Suva, Peter Kaiser, Munira A Basrai
Nucleic Acids Res. 2022 Apr 8; 50(6): 3276–3291. Published online 2022 Mar 2. doi: 10.1093/nar/gkac135
PMCID:
PMC8989521
AbstractArticlePDF–9.0M
14.
Translocation of polyubiquitinated protein substrates by the hexameric Cdc48 ATPase
Zhejian Ji, Hao Li, Daniele Peterle, Joao A. Paulo, Scott B. Ficarro, Thomas E. Wales, Jarrod A. Marto, Steven P. Gygi, John R. Engen, Tom A. Rapoport
Mol Cell. Author manuscript; available in PMC 2023 Feb 3.
Published in final edited form as: Mol Cell. 2022 Feb 3; 82(3): 570–584.e8. Published online 2021 Dec 23. doi: 10.1016/j.molcel.2021.11.033
PMCID:
PMC8818041
AbstractArticlePDF–2.5M
15.
Broader roles of the ubiquitin-like protein Hub1 indicated by its yeast two-hybrid interactors
Amjadudheen Varikkapulakkal, Anuraag Ghosh, Shravan Kumar Mishra
MicroPubl Biol. 2022; 2022: 10.17912/micropub.biology.000519. Published online 2022 Jan 25. doi: 10.17912/micropub.biology.000519
PMCID:
PMC8790634
AbstractArticlePDF–414K
16.
Nucleolar release of rDNA repeats for repair involves SUMO-mediated untethering by the Cdc48/p97 segregase
Matías Capella, Imke K. Mandemaker, Lucía Martín Caballero, Fabian den Brave, Boris Pfander, Andreas G. Ladurner, Stefan Jentsch, Sigurd Braun
Nat Commun. 2021; 12: 4918. Published online 2021 Aug 13. doi: 10.1038/s41467-021-25205-2
PMCID:
PMC8363623
AbstractArticlePDF–4.9M
17.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
18.
RNA-binding and prion domains: the Yin and Yang of phase separation
Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia
Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681
PMCID:
PMC7515694
AbstractArticlePDF–3.1M
19.
CMG helicase disassembly is controlled by replication fork DNA, replisome components and a ubiquitin threshold
Tom D Deegan, Progya P Mukherjee, Ryo Fujisawa, Cristian Polo Rivera, Karim Labib
eLife. 2020; 9: e60371. Published online 2020 Aug 17. doi: 10.7554/eLife.60371
PMCID:
PMC7462611
AbstractArticlePDF–4.9M
20.
The Cdc48 Complex Alleviates the Cytotoxicity of Misfolded Proteins by Regulating Ubiquitin Homeostasis
Ryan Higgins, Marie-Helene Kabbaj, Delaney Sherwin, Lauren A. Howell, Alexa Hatcher, Robert J. Tomko, Jr, Yanchang Wang
Cell Rep. Author manuscript; available in PMC 2020 Jul 30.
Published in final edited form as: Cell Rep. 2020 Jul 14; 32(2): 107898. doi: 10.1016/j.celrep.2020.107898
PMCID:
PMC7392062
AbstractArticlePDF–1.8M

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