PMC Links for GEO Profiles (Select 9313004) - PMC

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 89346514.

Yeast Ssd1 is a non-enzymatic member of the RNase II family with an alternative RNA recognition site

Rosemary A Bayne, Uma Jayachandran, Aleksandra Kasprowicz, Stefan Bresson, David Tollervey, Edward W J Wallace, Atlanta G Cook

Nucleic Acids Res. 2022 Mar 21; 50(5): 2923–2937. Published online 2021 Jul 24. doi: 10.1093/nar/gkab615

PMCID:: PMC8934651

Abstract Article PDF–4.4M

Select item 80457145.

Protein quality control degron-containing substrates are differentially targeted in the cytoplasm and nucleus by ubiquitin ligases

Christopher M Hickey, Carolyn Breckel, Mengwen Zhang, William C Theune, Mark Hochstrasser

Genetics. 2021 Jan; 217(1): 1–19. Published online 2020 Dec 22. doi: 10.1093/genetics/iyaa031

PMCID:: PMC8045714

Abstract Article PDF–2.3M

Select item 75156946.

RNA-binding and prion domains: the Yin and Yang of phase separation

Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia

Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681

PMCID:: PMC7515694

Abstract Article PDF–3.1M

Select item 72450967.

Five enzymes of the Arg/N-degron pathway form a targeting complex: The concept of superchanneling

Jang-Hyun Oh, Ju-Yeon Hyun, Shun-Jia Chen, Alexander Varshavsky

Proc Natl Acad Sci U S A. 2020 May 19; 117(20): 10778–10788. Published online 2020 May 4. doi: 10.1073/pnas.2003043117

PMCID:: PMC7245096

Abstract Article PDF–1.7M

Select item 65460558.

Ccr4–Not maintains genomic integrity by controlling the ubiquitylation and degradation of arrested RNAPII

Haoyang Jiang, Marley Wolgast, Laura M. Beebe, Joseph C. Reese

Genes Dev. 2019 Jun 1; 33(11-12): 705–717. doi: 10.1101/gad.322453.118

PMCID:: PMC6546055

Abstract Article PDF–5.0M

Select item 62587349.

Slx5-Slx8 ubiquitin ligase targets active pools of the Yen1 nuclease to limit crossover formation

Ibtissam Talhaoui, Manuel Bernal, Janet R. Mullen, Hugo Dorison, Benoit Palancade, Steven J. Brill, Gerard Mazón

Nat Commun. 2018; 9: 5016. Published online 2018 Nov 27. doi: 10.1038/s41467-018-07364-x

PMCID:: PMC6258734

Abstract Article PDF–4.1M

Select item 593718310.

Proteasome Activity Is Influenced by the HECT_2 Protein Ipa1 in Budding Yeast

Anne P. Lutz, Sarah Schladebeck, Christian Renicke, Roberta Spadaccini, Hans-Ulrich Mösch, Christof Taxis

Genetics. 2018 May; 209(1): 157–171. Published online 2018 Mar 8. doi: 10.1534/genetics.118.300744

PMCID:: PMC5937183

Abstract Article PDF–2.1M

Select item 566188511.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560025412.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 543781513.

Ubiquitylation‐dependent oligomerization regulates activity of Nedd4 ligases

Ilan Attali, William Sam Tobelaim, Avinash Persaud, Khatereh Motamedchaboki, Kobi J Simpson‐Lavy, Bayan Mashahreh, Olga Levin‐Kravets, Tal Keren‐Kaplan, Inbar Pilzer, Martin Kupiec, Reuven Wiener, Dieter A Wolf, Daniela Rotin, Gali Prag

EMBO J. 2017 Feb 15; 36(4): 425–440. Published online 2017 Jan 9. doi: 10.15252/embj.201694314

PMCID:: PMC5437815

Abstract Article PDF–2.3M

Select item 505508314.

Functional Metabolomics Describes the Yeast Biosynthetic Regulome

Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser

Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007

PMCID:: PMC5055083

Abstract Article PDF–3.9M

Select item 502647315.

A conserved quality-control pathway that mediates degradation of unassembled ribosomal proteins

Min-Kyung Sung, Tanya R Porras-Yakushi, Justin M Reitsma, Ferdinand M Huber, Michael J Sweredoski, André Hoelz, Sonja Hess, Raymond J Deshaies

eLife. 2016; 5: e19105. Published online 2016 Aug 23. doi: 10.7554/eLife.19105

PMCID:: PMC5026473

Abstract Article PDF–4.2M

Select item 496147416.

Hul5 HECT Ubiquitin Ligase Plays A Major Role in The Ubiquitylation and Turn Over of Cytosolic Misfolded Proteins

Nancy N. Fang, Alex H.M. Ng, Vivien Measday, Thibault Mayor

Nat Cell Biol. Author manuscript; available in PMC 2016 Jul 26.

Published in final edited form as: Nat Cell Biol. 2011 Oct 9; 13(11): 1344–1352. Published online 2011 Oct 9. doi: 10.1038/ncb2343

PMCID:: PMC4961474

Abstract Article PDF–1.9M

Select item 493819517.

Tmc1 Is a Dynamically Regulated Effector of the Rpn4 Proteotoxic Stress Response

Angel Guerra-Moreno, John Hanna

J Biol Chem. 2016 Jul 8; 291(28): 14788–14795. Published online 2016 May 12. doi: 10.1074/jbc.M116.726398

PMCID:: PMC4938195

Abstract Article PDF–2.8M

Select item 484875818.

An inter‐species protein–protein interaction network across vast evolutionary distance

Quan Zhong, Samuel J Pevzner, Tong Hao, Yang Wang, Roberto Mosca, Jörg Menche, Mikko Taipale, Murat Taşan, Changyu Fan, Xinping Yang, Patrick Haley, Ryan R Murray, Flora Mer, Fana Gebreab, Stanley Tam, Andrew MacWilliams, Amélie Dricot, Patrick Reichert, Balaji Santhanam, Lila Ghamsari, Michael A Calderwood, Thomas Rolland, Benoit Charloteaux, Susan Lindquist, Albert‐László Barabási, David E Hill, Patrick Aloy, Michael E Cusick, Yu Xia, Frederick P Roth, Marc Vidal

Mol Syst Biol. 2016 Apr; 12(4): 865. Published online 2016 Apr 23. doi: 10.15252/msb.20156484

PMCID:: PMC4848758

Abstract Article PDF–2.1M

Select item 431870519.

K63 polyubiquitination is a new modulator of the oxidative stress response

Gustavo M. Silva, Daniel Finley, Christine Vogel

Nat Struct Mol Biol. Author manuscript; available in PMC 2015 Aug 1.

Published in final edited form as: Nat Struct Mol Biol. 2015 Feb; 22(2): 116–123. Published online 2015 Jan 26. doi: 10.1038/nsmb.2955

PMCID:: PMC4318705

Abstract Article PDF–984K

Select item 417635520.

Degradation of DNA damage-independently stalled RNA polymerase II is independent of the E3 ligase Elc1

Eleni Karakasili, Cornelia Burkert-Kautzsch, Anja Kieser, Katja Sträßer

Nucleic Acids Res. 2014 Sep 15; 42(16): 10503–10515. Published online 2014 Aug 12. doi: 10.1093/nar/gku731

Correction in:: Nucleic Acids Res. 2015 Feb 27; 43(4): 2486.

PMCID:: PMC4176355

Abstract Article PDF–1.2M

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