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Items: 1 to 20 of 45

1.
Species-specific chromatin landscape determines how transposable elements shape genome evolution
Yuheng Huang, Harsh Shukla, Yuh Chwen G Lee
eLife. 2022; 11: e81567. Published online 2022 Aug 23. doi: 10.7554/eLife.81567
PMCID:
PMC9398452
AbstractArticlePDF–5.5M
2.
Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes
Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis
G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349
PMCID:
PMC8664486
AbstractArticlePDF–3.1M
3.
Defective Satellite DNA Clustering into Chromocenters Underlies Hybrid Incompatibility in Drosophila
Madhav Jagannathan, Yukiko M Yamashita
Mol Biol Evol. 2021 Nov; 38(11): 4977–4986. Published online 2021 Jul 24. doi: 10.1093/molbev/msab221
PMCID:
PMC8557456
AbstractArticlePDF–894K
4.
The Integrity of the HMR complex is necessary for centromeric binding and reproductive isolation in Drosophila
Andrea Lukacs, Andreas W. Thomae, Peter Krueger, Tamas Schauer, Anuroop V. Venkatasubramani, Natalia Y. Kochanova, Wasim Aftab, Rupam Choudhury, Ignasi Forne, Axel Imhof
PLoS Genet. 2021 Aug; 17(8): e1009744. Published online 2021 Aug 23. doi: 10.1371/journal.pgen.1009744
PMCID:
PMC8412352
AbstractArticlePDF–3.0M
5.
Insights into HP1a-Chromatin Interactions
Silvia Meyer-Nava, Victor E. Nieto-Caballero, Mario Zurita, Viviana Valadez-Graham
Cells. 2020 Aug; 9(8): 1866. Published online 2020 Aug 9. doi: 10.3390/cells9081866
PMCID:
PMC7465937
AbstractArticlePDF–2.2M
6.
A Comprehensive Drosophila melanogaster Transcription Factor Interactome
Leila Shokri, Sachi Inukai, Antonina Hafner, Kathryn Weinand, Korneel Hens, Anastasia Vedenko, Stephen S. Gisselbrecht, Riccardo Dainese, Johannes Bischof, Edy Furger, Jean-Daniel Feuz, Konrad Basler, Bart Deplancke, Martha L. Bulyk
Cell Rep. Author manuscript; available in PMC 2019 Apr 26.
Published in final edited form as: Cell Rep. 2019 Apr 16; 27(3): 955–970.e7. doi: 10.1016/j.celrep.2019.03.071
PMCID:
PMC6485956
AbstractArticlePDF–1.6M
7.
Evolution of the Drosophila melanogaster Chromatin Landscape and Its Associated Proteins
Elise Parey, Anton Crombach
Genome Biol Evol. 2019 Mar; 11(3): 660–677. Published online 2019 Jan 28. doi: 10.1093/gbe/evz019
PMCID:
PMC6411481
AbstractArticlePDF–1.2M
8.
Generation of a versatile BiFC ORFeome library for analyzing protein–protein interactions in live Drosophila
Johannes Bischof, Marilyne Duffraisse, Edy Furger, Leiore Ajuria, Guillaume Giraud, Solene Vanderperre, Rachel Paul, Mikael Björklund, Damien Ahr, Alexis W Ahmed, Lionel Spinelli, Christine Brun, Konrad Basler, Samir Merabet
eLife. 2018; 7: e38853. Published online 2018 Sep 24. doi: 10.7554/eLife.38853
PMCID:
PMC6177257
AbstractArticlePDF–4.9M
9.
Species-wide survey reveals the various flavors of intraspecific reproductive isolation in yeast
Jing Hou, Téo Fournier, Joseph Schacherer
FEMS Yeast Res. 2016 Aug 1; 16(5): fow048. Published online 2016 Jun 9. doi: 10.1093/femsyr/fow048
PMCID:
PMC5976011
AbstractArticlePDF–500K
10.
The Hybrid Incompatibility Genes Lhr and Hmr Are Required for Sister Chromatid Detachment During Anaphase but Not for Centromere Function
Jacob A. Blum, Silvia Bonaccorsi, Marta Marzullo, Valeria Palumbo, Yukiko M. Yamashita, Daniel A. Barbash, Maurizio Gatti
Genetics. 2017 Dec; 207(4): 1457–1472. Published online 2017 Oct 18. doi: 10.1534/genetics.117.300390
PMCID:
PMC5714459
AbstractArticlePDF–2.2M
11.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
12.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
13.
Moving Speciation Genetics Forward: Modern Techniques Build on Foundational Studies in Drosophila
Dean M. Castillo, Daniel A. Barbash
Genetics. 2017 Nov; 207(3): 825–842. Published online 2017 Oct 25. doi: 10.1534/genetics.116.187120
PMCID:
PMC5676244
AbstractArticlePDF–941K
14.
Mobile-phone radiation-induced perturbation of gene-expression profiling, redox equilibrium and sporadic-apoptosis control in the ovary of Drosophila melanogaster
Areti K. Manta, Deppie Papadopoulou, Alexander P. Polyzos, Adamantia F. Fragopoulou, Aikaterini S. Skouroliakou, Dimitris Thanos, Dimitrios J. Stravopodis, Lukas H. Margaritis
Fly (Austin) 2017; 11(2): 75–95. Published online 2016 Dec 14. doi: 10.1080/19336934.2016.1270487
PMCID:
PMC5406167
AbstractArticlePDF–1.4M
15.
The Drosophila speciation factor HMR localizes to genomic insulator sites
Thomas Andreas Gerland, Bo Sun, Pawel Smialowski, Andrea Lukacs, Andreas Walter Thomae, Axel Imhof
PLoS One. 2017; 12(2): e0171798. Published online 2017 Feb 16. doi: 10.1371/journal.pone.0171798
PMCID:
PMC5312933
AbstractArticlePDF–3.4M
16.
The composition and organization of Drosophila heterochromatin are heterogeneous and dynamic
Joel M Swenson, Serafin U Colmenares, Amy R Strom, Sylvain V Costes, Gary H Karpen
eLife. 2016; 5: e16096. Published online 2016 Aug 11. doi: 10.7554/eLife.16096
PMCID:
PMC4981497
AbstractArticlePDF–4.8M
17.
Cold acclimation wholly reorganizes the Drosophila melanogaster transcriptome and metabolome
Heath A. MacMillan, Jose M. Knee, Alice B. Dennis, Hiroko Udaka, Katie E. Marshall, Thomas J. S. Merritt, Brent J. Sinclair
Sci Rep. 2016; 6: 28999. Published online 2016 Jun 30. doi: 10.1038/srep28999
PMCID:
PMC4928047
AbstractArticlePDF–3.1M
18.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
19.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
20.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K

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