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Items: 18

1.
Interaction network of human early embryonic transcription factors
Lisa Gawriyski, Zenglai Tan, Xiaonan Liu, Iftekhar Chowdhury, Dicle Malaymar Pinar, Qin Zhang, Jere Weltner, Eeva-Mari Jouhilahti, Gong-Hong Wei, Juha Kere, Markku Varjosalo
EMBO Rep. 2024 Mar; 25(3): 1589–1622. Published online 2024 Jan 31. doi: 10.1038/s44319-024-00074-0
PMCID:
PMC10933267
AbstractArticlePDF–2.9M
2.
ZSCAN4-binding motif—TGCACAC is conserved and enriched in CA/TG microsatellites in both mouse and human genomes
Tomohiko Akiyama, Kei-ichiro Ishiguro, Nana Chikazawa, Shigeru B H Ko, Masashi Yukawa, Minoru S H Ko
DNA Res. 2024 Feb; 31(1): dsad029. Published online 2023 Dec 28. doi: 10.1093/dnares/dsad029
PMCID:
PMC10785592
AbstractArticlePDF–3.3M
3.
Low expression of ZSCAN4 predicts unfavorable outcome in urothelial carcinoma of upper urinary tract and urinary bladder
Hong-Lin He, Hong-Yue Lai, Ti-Chun Chan, Chung-Hsi Hsing, Steven K. Huang, Kun-Lin Hsieh, Tzu-Ju Chen, Wan-Shan Li, Yu-Hsuan Kuo, Yow-Ling Shiue, Chien-Feng Li
World J Surg Oncol. 2023; 21: 62. Published online 2023 Feb 25. doi: 10.1186/s12957-023-02948-4
PMCID:
PMC9960215
AbstractArticlePDF–2.2M
4.
Impact of cytosine methylation on DNA binding specificities of human transcription factors
Yimeng Yin, Ekaterina Morgunova, Arttu Jolma, Eevi Kaasinen, Biswajyoti Sahu, Syed Khund-Sayeed, Pratyush K. Das, Teemu Kivioja, Kashyap Dave, Fan Zhong, Kazuhiro R. Nitta, Minna Taipale, Alexander Popov, Paul A. Ginno, Silvia Domcke, Jian Yan, Dirk Schübeler, Charles Vinson, Jussi Taipale
Science. Author manuscript; available in PMC 2021 Mar 30.
Published in final edited form as: Science. 2017 May 5; 356(6337): eaaj2239. doi: 10.1126/science.aaj2239
PMCID:
PMC8009048
AbstractArticlePDF–2.6M
5.
ZSCAN4 facilitates chromatin remodeling and promotes the cancer stem cell phenotype
Benjamin A. Portney, Michal Arad, Aditi Gupta, Robert A. Brown, Raju Khatri, Phyo Nay Lin, Andrea M. Hebert, Kristen H. Angster, Lorna E. Silipino, W. Alex Meltzer, Rodney J. Taylor, Michal Zalzman
Oncogene. 2020; 39(26): 4970–4982. Published online 2020 Jun 7. doi: 10.1038/s41388-020-1333-1
PMCID:
PMC7314663
AbstractArticlePDF–3.6M
6.
A reference map of the human binary protein interactome
Katja Luck, Dae-Kyum Kim, Luke Lambourne, Kerstin Spirohn, Bridget E. Begg, Wenting Bian, Ruth Brignall, Tiziana Cafarelli, Francisco J. Campos-Laborie, Benoit Charloteaux, Dongsic Choi, Atina G. Coté, Meaghan Daley, Steven Deimling, Alice Desbuleux, Amélie Dricot, Marinella Gebbia, Madeleine F. Hardy, Nishka Kishore, Jennifer J. Knapp, István A. Kovács, Irma Lemmens, Miles W. Mee, Joseph C. Mellor, Carl Pollis, Carles Pons, Aaron D. Richardson, Sadie Schlabach, Bridget Teeking, Anupama Yadav, Mariana Babor, Dawit Balcha, Omer Basha, Christian Bowman-Colin, Suet-Feung Chin, Soon Gang Choi, Claudia Colabella, Georges Coppin, Cassandra D’Amata, David De Ridder, Steffi De Rouck, Miquel Duran-Frigola, Hanane Ennajdaoui, Florian Goebels, Liana Goehring, Anjali Gopal, Ghazal Haddad, Elodie Hatchi, Mohamed Helmy, Yves Jacob, Yoseph Kassa, Serena Landini, Roujia Li, Natascha van Lieshout, Andrew MacWilliams, Dylan Markey, Joseph N. Paulson, Sudharshan Rangarajan, John Rasla, Ashyad Rayhan, Thomas Rolland, Adriana San-Miguel, Yun Shen, Dayag Sheykhkarimli, Gloria M. Sheynkman, Eyal Simonovsky, Murat Taşan, Alexander Tejeda, Vincent Tropepe, Jean-Claude Twizere, Yang Wang, Robert J. Weatheritt, Jochen Weile, Yu Xia, Xinping Yang, Esti Yeger-Lotem, Quan Zhong, Patrick Aloy, Gary D. Bader, Javier De Las Rivas, Suzanne Gaudet, Tong Hao, Janusz Rak, Jan Tavernier, David E. Hill, Marc Vidal, Frederick P. Roth, Michael A. Calderwood
Nature. Author manuscript; available in PMC 2020 Oct 8.
Published in final edited form as: Nature. 2020 Apr; 580(7803): 402–408. Published online 2020 Apr 8. doi: 10.1038/s41586-020-2188-x
PMCID:
PMC7169983
AbstractArticlePDF–5.4M
7.
ZSCAN4 is negatively regulated by the ubiquitin-proteasome system and the E3 ubiquitin ligase RNF20
Benjamin A. Portney, Raju Khatri, W. Alex Meltzer, Jennifer M. Mariano, Michal Zalzman
Biochem Biophys Res Commun. Author manuscript; available in PMC 2018 May 1.
Published in final edited form as: Biochem Biophys Res Commun. 2018 Mar 25; 498(1): 72–78. Published online 2018 Mar 2. doi: 10.1016/j.bbrc.2018.02.155
PMCID:
PMC5928792
AbstractArticlePDF–1.8M
8.
The senescence-associated secretory phenotype is potentiated by feedforward regulatory mechanisms involving Zscan4 and TAK1
Boyi Zhang, Da Fu, Qixia Xu, Xianling Cong, Chunyan Wu, Xiaoming Zhong, Yushui Ma, Zhongwei Lv, Fei Chen, Liu Han, Min Qian, Y. Eugene Chin, Eric W. -F. Lam, Paul Chiao, Yu Sun
Nat Commun. 2018; 9: 1723. Published online 2018 Apr 30. doi: 10.1038/s41467-018-04010-4
PMCID:
PMC5928226
AbstractArticlePDF–5.3M
9.
Zscan4 is expressed specifically during late meiotic prophase in both spermatogenesis and oogenesis
Kei-ichiro Ishiguro, Manuela Monti, Tomohiko Akiyama, Hiromi Kimura, Nana Chikazawa-Nohtomi, Miki Sakota, Saeko Sato, Carlo Alberto Redi, Shigeru B. H. Ko, Minoru S. H. Ko
In Vitro Cell Dev Biol Anim. 2017; 53(2): 167–178. Published online 2016 Oct 3. doi: 10.1007/s11626-016-0096-z
PMCID:
PMC5311088
AbstractArticlePDF–1.9M
10.
Expression analysis of the endogenous Zscan4 locus and its coding proteins in mouse ES cells and preimplantation embryos
Kei-ichiro Ishiguro, Yuhki Nakatake, Nana Chikazawa-Nohtomi, Hiromi Kimura, Tomohiko Akiyama, Mayumi Oda, Shigeru B.H. Ko, Minoru S.H. Ko
In Vitro Cell Dev Biol Anim. 2017; 53(2): 179–190. Published online 2016 Oct 3. doi: 10.1007/s11626-016-0097-y
PMCID:
PMC5311086
AbstractArticlePDF–1.4M
11.
Rif1 Maintains Telomere Length Homeostasis of ESCs by Mediating Heterochromatin Silencing
Jiameng Dan, Yifei Liu, Na Liu, Maria Chiourea, Maja Okuka, Tao Wu, Xiaoying Ye, Chunlin Mou, Lei Wang, Lingling Wang, Yu Yin, Jihong Yuan, Bingfeng Zuo, Fang Wang, Zhiguo Li, Xinghua Pan, Zhinan Yin, Lingyi Chen, David L. Keefe, Sarantis Gagos, Andrew Xiao, Lin Liu
Dev Cell. Author manuscript; available in PMC 2016 Jan 20.
Published in final edited form as: Dev Cell. 2014 Apr 14; 29(1): 7–19. doi: 10.1016/j.devcel.2014.03.004
PMCID:
PMC4720134
AbstractArticlePDF–927K
12.
Zscan4 interacts directly with human Rap1 in cancer cells regardless of telomerase status
Kyungwoo Lee, Lauren S Gollahon
Cancer Biol Ther. 2014 Aug 1; 15(8): 1094–1105. Published online 2014 May 19. doi: 10.4161/cbt.29220
PMCID:
PMC4119077
AbstractArticlePDF–2.9M
13.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
14.
Zscan4 regulates telomere elongation and genomic stability in ES cells
Michal Zalzman, Geppino Falco, Lioudmila V. Sharova, Akira Nishiyama, Marshall Thomas, Sung-Lim Lee, Carole A. Stagg, Hien G. Hoang, Hsih-Te Yang, Fred E. Indig, Robert P. Wersto, Minoru S. H. Ko
Nature. Author manuscript; available in PMC 2010 Oct 8.
Published in final edited form as: Nature. 2010 Apr 8; 464(7290): 858–863. Published online 2010 Mar 24. doi: 10.1038/nature08882
PMCID:
PMC2851843
AbstractArticlePDF–1.8M
15.
An atlas of combinatorial transcriptional regulation in mouse and man
The FANTOM consortium and RIKEN Omics Science Center
Cell. Author manuscript; available in PMC 2011 Mar 5.
Published in final edited form as: Cell. 2010 Mar 5; 140(5): 744–752. doi: 10.1016/j.cell.2010.01.044
Correction in:
volume 141 on page 369
PMCID:
PMC2836267
AbstractArticlePDF–2.2M
16.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K
17.
Functional Proteomics Mapping of a Human Signaling Pathway
Frédéric Colland, Xavier Jacq, Virginie Trouplin, Christelle Mougin, Caroline Groizeleau, Alexandre Hamburger, Alain Meil, Jérôme Wojcik, Pierre Legrain, Jean-Michel Gauthier
Genome Res. 2004 Jul; 14(7): 1324–1332. doi: 10.1101/gr.2334104
PMCID:
PMC442148
AbstractArticlePDF–290K
18.
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences
Mammalian Gene Collection (MGC) Program Team
Proc Natl Acad Sci U S A. 2002 Dec 24; 99(26): 16899–16903. Published online 2002 Dec 11. doi: 10.1073/pnas.242603899
PMCID:
PMC139241
AbstractArticlePDF–118K

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