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Items: 1 to 20 of 31

1.
A comprehensive Drosophila resource to identify key functional interactions between SARS-CoV-2 factors and host proteins
Annabel Guichard, Shenzhao Lu, Oguz Kanca, Daniel Bressan, Yan Huang, Mengqi Ma, Sara Sanz Juste, Jonathan C. Andrews, Kristy L. Jay, Marketta Sneider, Ruth Schwartz, Mei-Chu Huang, Danqing Bei, Hongling Pan, Liwen Ma, Wen-Wen Lin, Ankush Auradkar, Pranjali Bhagwat, Soo Park, Kenneth H. Wan, Takashi Ohsako, Toshiyuki Takano-Shimizu, Susan E. Celniker, Michael F. Wangler, Shinya Yamamoto, Hugo J. Bellen, Ethan Bier
Cell Rep. Author manuscript; available in PMC 2024 Mar 25.
Published in final edited form as: Cell Rep. 2023 Aug 29; 42(8): 112842. Published online 2023 Jul 20. doi: 10.1016/j.celrep.2023.112842
PMCID:
PMC10962759
AbstractArticlePDF–3.0M
2.
TFOFinder: Python program for identifying purine-only double-stranded stretches in the predicted secondary structure(s) of RNA targets
Atara Neugroschl, Irina E. Catrina
PLoS Comput Biol. 2023 Aug; 19(8): e1011418. Published online 2023 Aug 25. doi: 10.1371/journal.pcbi.1011418
PMCID:
PMC10484449
AbstractArticlePDF–3.1M
3.
Defective minor spliceosomes induce SMA-associated phenotypes through sensitive intron-containing neural genes in Drosophila
Liang Li, Zhan Ding, Ting-Lin Pang, Bei Zhang, Chen-Hui Li, An-Min Liang, Yu-Ru Wang, Yu Zhou, Yu-Jie Fan, Yong-Zhen Xu
Nat Commun. 2020; 11: 5608. Published online 2020 Nov 5. doi: 10.1038/s41467-020-19451-z
PMCID:
PMC7644725
AbstractArticlePDF–3.0M
4.
Analysis of genes within the schizophrenia-linked 22q11.2 deletion identifies interaction of night owl/LZTR1 and NF1 in GABAergic sleep control
Gianna W. Maurer, Alina Malita, Stanislav Nagy, Takashi Koyama, Thomas M. Werge, Kenneth A. Halberg, Michael J. Texada, Kim Rewitz
PLoS Genet. 2020 Apr; 16(4): e1008727. Published online 2020 Apr 27. doi: 10.1371/journal.pgen.1008727
PMCID:
PMC7205319
AbstractArticlePDF–4.4M
5.
Drosophila ZDHHC8 palmitoylates scribble and Ras64B and controls growth and viability
Katrin Strassburger, Evangeline Kang, Aurelio A. Teleman
PLoS One. 2019; 14(2): e0198149. Published online 2019 Feb 8. doi: 10.1371/journal.pone.0198149
PMCID:
PMC6368284
AbstractArticlePDF–2.2M
6.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
7.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
8.
Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing
Alborz Mazloomian, Irmtraud M Meyer
RNA Biol. 2015 Dec; 12(12): 1391–1401. Published online 2015 Oct 29. doi: 10.1080/15476286.2015.1107703
PMCID:
PMC4829317
AbstractArticlePDF–609K
9.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
10.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
11.
Synergistic Interactions between Drosophila Orthologues of Genes Spanned by De Novo Human CNVs Support Multiple-Hit Models of Autism
Stuart J. Grice, Ji-Long Liu, Caleb Webber
PLoS Genet. 2015 Mar; 11(3): e1004998. Published online 2015 Mar 27. doi: 10.1371/journal.pgen.1004998
PMCID:
PMC4376901
AbstractArticlePDF–3.5M
12.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
13.
Developmental arrest of Drosophila survival motor neuron (Smn) mutants accounts for differences in expression of minor intron-containing genes
Eric L. Garcia, Zhipeng Lu, Michael P. Meers, Kavita Praveen, A. Gregory Matera
RNA. 2013 Nov; 19(11): 1510–1516. doi: 10.1261/rna.038919.113
PMCID:
PMC3851718
AbstractArticlePDF–410K
14.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
15.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
16.
A Drosophila model of Spinal Muscular Atrophy uncouples the snRNP biogenesis functions of survival motor neuron from locomotion and viability defects
Kavita Praveen, Ying Wen, A. Gregory Matera
Cell Rep. Author manuscript; available in PMC 2012 Jul 26.
Published in final edited form as: Cell Rep. 2012 Jun 28; 1(6): 624–631. Published online 2012 Jun 21. doi: 10.1016/j.celrep.2012.05.014
PMCID:
PMC3405901
AbstractArticlePDF–1.0M
17.
Comparison of Parallel High-Throughput RNA Sequencing Between Knockout of TDP-43 and Its Overexpression Reveals Primarily Nonreciprocal and Nonoverlapping Gene Expression Changes in the Central Nervous System of Drosophila
Dennis J. Hazelett, Jer-Cherng Chang, Daniel L. Lakeland, David B. Morton
G3 (Bethesda) 2012 Jul; 2(7): 789–802. Published online 2012 Jul 1. doi: 10.1534/g3.112.002998
PMCID:
PMC3385985
AbstractArticlePDF–1.3M
18.
In Vivo Analysis of Proteomes and Interactomes Using Parallel Affinity Capture (iPAC) Coupled to Mass Spectrometry
Johanna S. Rees, Nick Lowe, Irina M. Armean, John Roote, Glynnis Johnson, Emma Drummond, Helen Spriggs, Edward Ryder, Steven Russell, Daniel St Johnston, Kathryn S. Lilley
Mol Cell Proteomics. 2011 Jun; 10(6): M110.002386. Published online 2011 Mar 29. doi: 10.1074/mcp.M110.002386
PMCID:
PMC3108830
AbstractArticlePDF–1.4M
19.
Gene Expression Profiling of U12-Type Spliceosome Mutant Drosophila Reveals Widespread Changes in Metabolic Pathways
Heli K. J. Pessa, Dario Greco, Jouni Kvist, Gudrun Wahlström, Tapio I. Heino, Petri Auvinen, Mikko J. Frilander
PLoS One. 2010; 5(10): e13215. Published online 2010 Oct 11. doi: 10.1371/journal.pone.0013215
PMCID:
PMC2952598
AbstractArticlePDF–2.5M
20.
The Drosophila protein palmitoylome: Characterizing palmitoyl-thioesterases and DHHC palmitoyl-transferases
Barbra A. Bannan, Jamie Van Etten, John A. Kohler, Yui Tsoi, Nicole M. Hansen, Stacey Sigmon, Elizabeth Fowler, Haley Buff, Tiffany S. Williams, Jeffrey G. Ault, Robert L. Glaser, Christopher A. Korey
Fly (Austin) Author manuscript; available in PMC 2010 Jul 7.
Published in final edited form as: Fly (Austin). 2008 Jul–Aug; 2(4): 198–214. doi: 10.4161/fly.6621
PMCID:
PMC2898910
AbstractArticlePDF–3.1M

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