PMC Links for GEO Profiles (Select 97147806) - PMC

Yuhki Saito, Soledad Miranda-Rottmann, Matteo Ruggiu, Christopher Y Park, John J Fak, Ru Zhong, Jeremy S Duncan, Brian A Fabella, Harald J Junge, Zhe Chen, Roberto Araya, Bernd Fritzsch, A J Hudspeth, Robert B Darnell

eLife. 2016; 5: e14371. Published online 2016 May 25. doi: 10.7554/eLife.14371

PMCID:: PMC4930328

Abstract Article PDF–6.2M

Select item 46337199.

The alternative splicing factor Nova2 regulates vascular development and lumen formation

Costanza Giampietro, Gianluca Deflorian, Stefania Gallo, Anna Di Matteo, Davide Pradella, Serena Bonomi, Elisa Belloni, Daniel Nyqvist, Valeria Quaranta, Stefano Confalonieri, Giovanni Bertalot, Fabrizio Orsenigo, Federica Pisati, Elisabetta Ferrero, Giuseppe Biamonti, Evelien Fredrickx, Carla Taveggia, Chris D. R. Wyatt, Manuel Irimia, Pier Paolo Di Fiore, Benjamin J. Blencowe, Elisabetta Dejana, Claudia Ghigna

Nat Commun. 2015; 6: 8479. Published online 2015 Oct 8. doi: 10.1038/ncomms9479

PMCID:: PMC4633719

Abstract Article PDF–3.4M

Select item 357241010.

A conditional knockout resource for the genome–wide study of mouse gene function

William C. Skarnes, Barry Rosen, Anthony P. West, Manousos Koutsourakis, Wendy Bushell, Vivek Iyer, Alejandro O. Mujica, Mark Thomas, Jennifer Harrow, Tony Cox, David Jackson, Jessica Severin, Patrick Biggs, Jun Fu, Michael Nefedov, Pieter J. de Jong, A. Francis Stewart, Allan Bradley

Nature. Author manuscript; available in PMC 2013 Feb 14.

Published in final edited form as: Nature. 2011 Jun 15; 474(7351): 337–342. Published online 2011 Jun 15. doi: 10.1038/nature10163

PMCID:: PMC3572410

Abstract Article PDF–1.1M

Select item 355242411.

NOVA-dependent regulation of cryptic NMD exons controls synaptic protein levels after seizure

Taesun Eom, Chaolin Zhang, Huidong Wang, Kenneth Lay, John Fak, Jeffrey L Noebels, Robert B Darnell

eLife. 2013; 2: e00178. Published online 2013 Jan 22. doi: 10.7554/eLife.00178

PMCID:: PMC3552424

Abstract Article PDF–5.5M

Select item 341241012.

Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls

Chaolin Zhang, Maria A. Frias, Aldo Mele, Matteo Ruggiu, Taesun Eom, Christina B. Marney, Huidong Wang, Donny D. Licatalosi, John J. Fak, Robert B. Darnell

Science. Author manuscript; available in PMC 2012 Aug 6.

Published in final edited form as: Science. 2010 Jul 23; 329(5990): 439–443. Published online 2010 Jun 17. doi: 10.1126/science.1191150

PMCID:: PMC3412410

Abstract Article PDF–2.3M

Select item 340438913.

Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain

Donny D. Licatalosi, Masato Yano, John J. Fak, Aldo Mele, Sarah E. Grabinski, Chaolin Zhang, Robert B. Darnell

Genes Dev. 2012 Jul 15; 26(14): 1626–1642. doi: 10.1101/gad.191338.112

PMCID:: PMC3404389

Abstract Article PDF–3.4M

Select item 317805914.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 302253415.

A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo

Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio

PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582

PMCID:: PMC3022534

Abstract Article PDF–3.8M

Select item 296585016.

Nova2 regulates neuronal migration through an RNA switch in disabled-1 signaling

Masato Yano, Yoshika Hayakawa-Yano, Aldo Mele, Robert B. Darnell

Neuron. Author manuscript; available in PMC 2011 Jun 24.

Published in final edited form as: Neuron. 2010 Jun 24; 66(6): 848–858. doi: 10.1016/j.neuron.2010.05.007

PMCID:: PMC2965850

Abstract Article PDF–2.1M

Select item 264247517.

Rescuing Z⁺ agrin splicing in Nova null mice restores synapse formation and unmasks a physiologic defect in motor neuron firing

Matteo Ruggiu, Ruth Herbst, Natalie Kim, Marko Jevsek, John J. Fak, Mary Anne Mann, Gerald Fischbach, Steven J. Burden, Robert B. Darnell

Proc Natl Acad Sci U S A. 2009 Mar 3; 106(9): 3513–3518. Published online 2009 Feb 12. doi: 10.1073/pnas.0813112106

PMCID:: PMC2642475

Abstract Article PDF–1.7M

Select item 259729418.

HITS-CLIP yields genome-wide insights into brain alternative RNA processing

Donny D. Licatalosi, Aldo Mele, John J. Fak, Jernej Ule, Melis Kayikci, Sung Wook Chi, Tyson A. Clark, Anthony C. Schweitzer, John E. Blume, Xuning Wang, Jennifer C. Darnell, Robert B. Darnell

Nature. Author manuscript; available in PMC 2009 May 27.

Published in final edited form as: Nature. 2008 Nov 27; 456(7221): 464–469. Published online 2008 Nov 2. doi: 10.1038/nature07488

PMCID:: PMC2597294

Abstract Article PDF–812K

Select item 141356819.

BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System

Susan Magdaleno, Patricia Jensen, Craig L Brumwell, Anna Seal, Karen Lehman, Andrew Asbury, Tony Cheung, Tommie Cornelius, Diana M Batten, Christopher Eden, Shannon M Norland, Dennis S Rice, Nilesh Dosooye, Sundeep Shakya, Perdeep Mehta, Tom Curran

PLoS Biol. 2006 Apr; 4(4): e86. Published online 2006 Mar 28. doi: 10.1371/journal.pbio.0040086

PMCID:: PMC1413568

Article PDF–99K

Select item 119959120.

A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain

Adrienne E McKee, Emmanuel Minet, Charlene Stern, Shervin Riahi, Charles D Stiles, Pamela A Silver

BMC Dev Biol. 2005; 5: 14. Published online 2005 Jul 20. doi: 10.1186/1471-213X-5-14

PMCID:: PMC1199591

Abstract Article PDF–2.0M

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