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Select item 80422701.

Comprehensive Identification and Alternative Splicing of Microexons in Drosophila

Ting-Lin Pang, Zhan Ding, Shao-Bo Liang, Liang Li, Bei Zhang, Yu Zhang, Yu-Jie Fan, Yong-Zhen Xu

Front Genet. 2021; 12: 642602. Published online 2021 Mar 30. doi: 10.3389/fgene.2021.642602

PMCID:: PMC8042270

Abstract Article PDF–3.6M

Select item 70078742.

The SUMO ligase Su(var)2-10 controls eu- and heterochromatic gene expression via establishment of H3K9 trimethylation and negative feedback regulation

Maria Ninova, Baira Godneeva, Yung-Chia Ariel Chen, Yicheng Luo, Sharan J. Prakash, Ferenc Jankovics, Miklós Erdélyi, Alexei A. Aravin, Katalin Fejes Tóth

Mol Cell. Author manuscript; available in PMC 2021 Feb 6.

Published in final edited form as: Mol Cell. 2020 Feb 6; 77(3): 571–585.e4. Published online 2019 Dec 31. doi: 10.1016/j.molcel.2019.09.033

PMCID:: PMC7007874

Abstract Article PDF–3.6M

Select item 65065393.

Tissue-specific (ts)CRISPR as an efficient strategy for in vivo screening in Drosophila

Hagar Meltzer, Efrat Marom, Idan Alyagor, Oded Mayseless, Victoria Berkun, Netta Segal-Gilboa, Tamar Unger, David Luginbuhl, Oren Schuldiner

Nat Commun. 2019; 10: 2113. Published online 2019 May 8. doi: 10.1038/s41467-019-10140-0

PMCID:: PMC6506539

Abstract Article PDF–6.5M

Select item 57078054.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 56890025.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 49333696.

Regulation of the BMP Signaling-Responsive Transcriptional Network in the Drosophila Embryo

Lisa Deignan, Marco T. Pinheiro, Catherine Sutcliffe, Abbie Saunders, Scott G. Wilcockson, Leo A. H. Zeef, Ian J. Donaldson, Hilary L. Ashe

PLoS Genet. 2016 Jul; 12(7): e1006164. Published online 2016 Jul 5. doi: 10.1371/journal.pgen.1006164

PMCID:: PMC4933369

Abstract Article PDF–21M

Select item 48293177.

Genome-wide identification and characterization of tissue-specific RNA editing events in D. melanogaster and their potential role in regulating alternative splicing

Alborz Mazloomian, Irmtraud M Meyer

RNA Biol. 2015 Dec; 12(12): 1391–1401. Published online 2015 Oct 29. doi: 10.1080/15476286.2015.1107703

PMCID:: PMC4829317

Abstract Article PDF–609K

Select item 48259558.

Sir2 Acts through Hepatocyte Nuclear Factor 4 to maintain insulin Signaling and Metabolic Homeostasis in Drosophila

Rebecca A. S. Palu, Carl S. Thummel

PLoS Genet. 2016 Apr; 12(4): e1005978. Published online 2016 Apr 8. doi: 10.1371/journal.pgen.1005978

PMCID:: PMC4825955

Abstract Article PDF–1.8M

Select item 45283309.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832910.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 435288711.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 428947212.

Adaptive Regulation of Testis Gene Expression and Control of Male Fertility by the Drosophila Harpin RNA Pathway

Jiayu Wen, Hong Duan, Fernando Bejarano, Katsutomo Okamura, Lacramioara Fabian, Julie A. Brill, Diane Bortolamiol-Becet, Raquel Martin, J. Graham Ruby, Eric C. Lai

Mol Cell. Author manuscript; available in PMC 2016 Jan 8.

Published in final edited form as: Mol Cell. 2015 Jan 8; 57(1): 165–178. Published online 2014 Dec 24. doi: 10.1016/j.molcel.2014.11.025

Correction in:: volume 58 on page 1133

PMCID:: PMC4289472

Abstract Article PDF–3.3M

Select item 381435213.

Genome-wide analysis of Staufen-associated mRNAs identifies secondary structures that confer target specificity

John D. Laver, Xiao Li, Kristin Ancevicius, J. Timothy Westwood, Craig A. Smibert, Quaid D. Morris, Howard D. Lipshitz

Nucleic Acids Res. 2013 Nov; 41(20): 9438–9460. Published online 2013 Aug 13. doi: 10.1093/nar/gkt702

PMCID:: PMC3814352

Abstract Article PDF–2.4M

Select item 379936514.

Core small nuclear ribonucleoprotein particle splicing factor SmD1 modulates RNA interference in Drosophila

Xiao-Peng Xiong, Krishna Kurthkoti, Kung-Yen Chang, Gianluigi Lichinchi, Nabanita De, Anette Schneemann, Ian J. MacRae, Tariq M. Rana, Norbert Perrimon, Rui Zhou

Proc Natl Acad Sci U S A. 2013 Oct 8; 110(41): 16520–16525. Published online 2013 Sep 25. doi: 10.1073/pnas.1315803110

PMCID:: PMC3799365

Abstract Article PDF–1.1M

Select item 353067715.

High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression

Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras

Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112

PMCID:: PMC3530677

Abstract Article PDF–1.5M

Select item 346946716.

The Many Landscapes of Recombination in Drosophila melanogaster

Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin

PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905

PMCID:: PMC3469467

Abstract Article PDF–1.6M

Select item 313081217.

PHYSIOLOGIC AND ANATOMIC CHARACTERIZATION OF THE BRAIN SURFACE GLIA BARRIER OF DROSOPHILA

Michael K. DeSalvo, Nasima Mayer, Fahima Mayer, Roland J. Bainton

Glia. Author manuscript; available in PMC 2012 Sep 1.

Published in final edited form as: Glia. 2011 Sep; 59(9): 1322–1340. Published online 2011 Feb 23. doi: 10.1002/glia.21147

PMCID:: PMC3130812

Abstract Article PDF–4.6M

Select item 304044118.

A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionary-conserved pain gene

G. Gregory Neely, Andreas Hess, Michael Costigan, Alex C. Keene, Spyros Goulas, Michiel Langeslag, Robert S Griffin, Inna Belfer, Feng Dai, Shad Smith, Luda Diatchenko, Vaijayanti Gupta, Cui-ping Xia, Sabina Amann, Silke Kreitz, Cornelia Heindl-Erdmann, Susanne Wolz, Cindy V. Ly, Suchir Arora, Rinku Sarangi, Debasis Dan, Maria Novatchkova, Mark Rosenzweig, Dustin Gibson, Darwin Truong, Daniel Schramek, Tamara Zoranovic, Shane J. F. Cronin, Belinda Angjeli, Kay Brune, Georg Dietzl, William Maixner, Arabella Meixner, Winston Thomas, J. Andrew Pospisilik, Mattias Alenius, Michaela Kress, Sai Subramaniam, Paul A. Garrity, Hugo J. Bellen, Clifford J. Woolf, Josef M. Penninger

Cell. Author manuscript; available in PMC 2011 Nov 12.

Published in final edited form as: Cell. 2010 Nov 12; 143(4): 628–638. doi: 10.1016/j.cell.2010.09.047

PMCID:: PMC3040441

Abstract Article PDF–2.0M

Select item 291930019.

Loqs and R2D2 act sequentially in the siRNA pathway in Drosophila

Joao Trindade Marques, Kevin Kim, Pei-Hsuan Wu, Trevis M. Alleyne, Nadereh Jafari, Richard W. Carthew

Nat Struct Mol Biol. Author manuscript; available in PMC 2010 Aug 10.

Published in final edited form as: Nat Struct Mol Biol. 2010 Jan; 17(1): 24–30. Published online 2009 Dec 27. doi: 10.1038/nsmb.1735

PMCID:: PMC2919300

Abstract Article PDF–2.8M

Select item 289525820.

An endogenous small interfering RNA pathway in Drosophila

Benjamin Czech, Colin D. Malone, Rui Zhou, Alexander Stark, Catherine Schlingeheyde, Monica Dus, Norbert Perrimon, Manolis Kellis, James A. Wohlschlegel, Ravi Sachidanandam, Gregory J. Hannon, Julius Brennecke

Nature. Author manuscript; available in PMC 2010 Jul 1.

Published in final edited form as: Nature. 2008 Jun 5; 453(7196): 798–802. Published online 2008 May 7. doi: 10.1038/nature07007

PMCID:: PMC2895258

Abstract Article PDF–2.0M

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