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Items: 1 to 20 of 60

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores
Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf
Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9
PMCID:
PMC10235086
AbstractArticlePDF–2.6M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
New Insights in Saccharomyces cerevisiae Response to the Cyanotoxin Microcystin-LR, Revealed by Proteomics and Gene Expression
Elisabete Valério, Sara Barreiros, Sara Rodrigues, Maria V. Turkina, Vitor M. Vasconcelos, Alexandre Campos
Toxins (Basel) 2020 Oct; 12(10): 667. Published online 2020 Oct 21. doi: 10.3390/toxins12100667
PMCID:
PMC7594057
AbstractArticlePDF–11M
5.
The Rad51 paralogs facilitate a novel DNA strand specific damage tolerance pathway
Joel C. Rosenbaum, Braulio Bonilla, Sarah R. Hengel, Tony M. Mertz, Benjamin W. Herken, Hinke G. Kazemier, Catherine A. Pressimone, Timothy C. Ratterman, Ellen MacNary, Alessio De Magis, Youngho Kwon, Stephen K. Godin, Bennett Van Houten, Daniel P. Normolle, Patrick Sung, Subha R. Das, Katrin Paeschke, Steven A. Roberts, Andrew P. VanDemark, Kara A. Bernstein
Nat Commun. 2019; 10: 3515. Published online 2019 Aug 5. doi: 10.1038/s41467-019-11374-8
PMCID:
PMC6683157
AbstractArticlePDF–1.3M
6.
Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME
Ingrid Rössler, Julia Embacher, Benjamin Pillet, Guillaume Murat, Laura Liesinger, Jutta Hafner, Julia Judith Unterluggauer, Ruth Birner-Gruenberger, Dieter Kressler, Brigitte Pertschy
Nucleic Acids Res. 2019 Jul 26; 47(13): 6984–7002. Published online 2019 May 7. doi: 10.1093/nar/gkz317
PMCID:
PMC6648895
AbstractArticlePDF–14M
7.
A Genome-Wide Screen Reveals a Role for the HIR Histone Chaperone Complex in Preventing Mislocalization of Budding Yeast CENP-A
Sultan Ciftci-Yilmaz, Wei-Chun Au, Prashant K. Mishra, Jessica R. Eisenstatt, Joy Chang, Anthony R. Dawson, Iris Zhu, Mahfuzur Rahman, Sven Bilke, Michael Costanzo, Anastasia Baryshnikova, Chad L. Myers, Paul S. Meltzer, David Landsman, Richard E. Baker, Charles Boone, Munira A. Basrai
Genetics. 2018 Sep; 210(1): 203–218. Published online 2018 Jul 16. doi: 10.1534/genetics.118.301305
PMCID:
PMC6116949
AbstractArticlePDF–2.1M
8.
Target of rapamycin complex 2–dependent phosphorylation of the coat protein Pan1 by Akl1 controls endocytosis dynamics in Saccharomyces cerevisiae
Clélia Bourgoint, Delphine Rispal, Marina Berti, Ireos Filipuzzi, Stephen B. Helliwell, Manoël Prouteau, Robbie Loewith
J Biol Chem. 2018 Aug 3; 293(31): 12043–12053. Published online 2018 Jun 12. doi: 10.1074/jbc.RA117.001615
PMCID:
PMC6078453
AbstractArticlePDF–3.9M
9.
Unscheduled DNA synthesis leads to elevated uracil residues at highly transcribed genomic loci in Saccharomyces cerevisiae
Norah Owiti, Shanqiao Wei, Ashok S. Bhagwat, Nayun Kim
PLoS Genet. 2018 Jul; 14(7): e1007516. Published online 2018 Jul 17. doi: 10.1371/journal.pgen.1007516
PMCID:
PMC6063437
AbstractArticlePDF–5.7M
10.
The Chromatin Remodeler Isw1 Prevents CAG Repeat Expansions During Transcription in Saccharomyces cerevisiae
Melissa R. Koch, Nealia C. M. House, Casey M. Cosetta, Robyn M. Jong, Christelle G. Salomon, Cailin E. Joyce, Elliot A. Philips, Xiaofeng A. Su, Catherine H. Freudenreich
Genetics. 2018 Mar; 208(3): 963–976. Published online 2018 Jan 5. doi: 10.1534/genetics.117.300529
PMCID:
PMC5844344
AbstractArticlePDF–1.6M
11.
Def1 and Dst1 play distinct roles in repair of AP lesions in highly transcribed genomic regions
Norah Owiti, Christopher Lopez, Shivani Singh, Andrei Stephenson, Nayun Kim
DNA Repair (Amst) Author manuscript; available in PMC 2018 Jul 1.
Published in final edited form as: DNA Repair (Amst). 2017 Jul; 55: 31–39. Published online 2017 May 10. doi: 10.1016/j.dnarep.2017.05.003
PMCID:
PMC5815317
AbstractArticlePDF–909K
12.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
13.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
14.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
15.
Functional characterisation of long intergenic non-coding RNAs through genetic interaction profiling in Saccharomyces cerevisiae
Dimitris Kyriakou, Emmanouil Stavrou, Panayiota Demosthenous, Georgia Angelidou, Bryan-Joseph San Luis, Charles Boone, Vasilis J. Promponas, Antonis Kirmizis
BMC Biol. 2016; 14: 106. Published online 2016 Dec 7. doi: 10.1186/s12915-016-0325-7
PMCID:
PMC5142380
AbstractArticlePDF–1.2M
16.
Identification of SUMO Modification Sites in the Base Excision Repair Protein, Ntg1
Daniel B. Swartzlander, Annie J. McPherson, Harry R. Powers, Kristin L. Limpose, Emily G. Kuiper, Natalya P. Degtyareva, Anita H. Corbett, Paul W. Doetsch
DNA Repair (Amst) Author manuscript; available in PMC 2017 Dec 1.
Published in final edited form as: DNA Repair (Amst). 2016 Dec; 48: 51–62. Published online 2016 Oct 31. doi: 10.1016/j.dnarep.2016.10.011
PMCID:
PMC5133457
AbstractArticlePDF–2.0M
17.
The Shu complex promotes error-free tolerance of alkylation-induced base excision repair products
Stephen K. Godin, Zhuying Zhang, Benjamin W. Herken, James W. Westmoreland, Alison G. Lee, Michael J. Mihalevic, Zhongxun Yu, Robert W. Sobol, Michael A. Resnick, Kara A. Bernstein
Nucleic Acids Res. 2016 Sep 30; 44(17): 8199–8215. Published online 2016 Jun 13. doi: 10.1093/nar/gkw535
PMCID:
PMC5041462
AbstractArticlePDF–9.6M
18.
Crosstalk between mitochondrial stress signals regulates yeast chronological lifespan
Elizabeth A. Schroeder, Gerald S. Shadel
Mech Ageing Dev. Author manuscript; available in PMC 2015 Jan 1.
Published in final edited form as: Mech Ageing Dev. 2014 Jan; 135: 41–49. Published online 2013 Dec 25. doi: 10.1016/j.mad.2013.12.002
PMCID:
PMC3943709
AbstractArticlePDF–1.5M
19.
Automated quantification of the subcellular localization of multi-compartment proteins via Q-SCAn
Nicholas C. Bauer, Anita H. Corbett, Paul W. Doetsch
Traffic. Author manuscript; available in PMC 2014 Dec 1.
Published in final edited form as: Traffic. 2013 Dec; 14(12): 10.1111/tra.12118. Published online 2013 Oct 10. doi: 10.1111/tra.12118
PMCID:
PMC3836439
AbstractArticlePDF–3.3M
20.
Defects in Base Excision Repair Sensitize Cells to Manganese in S. cerevisiae
Adrienne P. Stephenson, Tryphon K. Mazu, Jana S. Miles, Miles D. Freeman, R. Renee Reams, Hernan Flores-Rozas
Biomed Res Int. 2013; 2013: 295635. Published online 2013 Oct 27. doi: 10.1155/2013/295635
PMCID:
PMC3825218
AbstractArticlePDF–1.0M

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