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Items: 1 to 20 of 41

1.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
Reciprocal hemizygosity analysis reveals that the Saccharomyces cerevisiae CGI121 gene affects lag time duration in synthetic grape must
Runze Li, Rebecca C Deed
G3 (Bethesda) 2021 Apr; 11(4): jkab061. Published online 2021 Mar 3. doi: 10.1093/g3journal/jkab061
PMCID:
PMC8759811
AbstractArticlePDF–648K
4.
Swc4 positively regulates telomere length independently of its roles in NuA4 and SWR1 complexes
Jia-Cheng Liu, Qian-Jin Li, Ming-Hong He, Can Hu, Pengfei Dai, Fei-Long Meng, Bo O Zhou, Jin-Qiu Zhou
Nucleic Acids Res. 2020 Dec 16; 48(22): 12792–12803. Published online 2020 Dec 3. doi: 10.1093/nar/gkaa1150
PMCID:
PMC7736797
AbstractArticlePDF–3.7M
5.
KEOPS complex promotes homologous recombination via DNA resection
Ming-Hong He, Jia-Cheng Liu, Yi-Si Lu, Zhi-Jing Wu, Ying-Ying Liu, Zhenfang Wu, Jing Peng, Jin-Qiu Zhou
Nucleic Acids Res. 2019 Jun 20; 47(11): 5684–5697. Published online 2019 Apr 2. doi: 10.1093/nar/gkz228
PMCID:
PMC6582355
AbstractArticlePDF–2.8M
6.
Perturbations of Transcription and Gene Expression-Associated Processes Alter Distribution of Cell Size Values in Saccharomyces cerevisiae
Nairita Maitra, Jayamani Anandhakumar, Heidi M. Blank, Craig D. Kaplan, Michael Polymenis
G3 (Bethesda) 2019 Jan; 9(1): 239–250. Published online 2018 Nov 21. doi: 10.1534/g3.118.200854
PMCID:
PMC6325893
AbstractArticlePDF–1.3M
7.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
8.
Transcriptome-wide analysis of roles for tRNA modifications in translational regulation
Hsin-Jung Chou, Elisa Donnard, H. Tobias Gustafsson, Manuel Garber, Oliver J. Rando
Mol Cell. Author manuscript; available in PMC 2018 Dec 7.
Published in final edited form as: Mol Cell. 2017 Dec 7; 68(5): 978–992.e4. Published online 2017 Nov 30. doi: 10.1016/j.molcel.2017.11.002
PMCID:
PMC5728682
AbstractArticlePDF–3.0M
9.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
10.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
11.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
12.
Hygromycin B Hypersensitive (hhy) Mutants Implicate an Intact Trans-Golgi and Late Endosome Interface in Efficient Tor1 Vacuolar Localization and TORC1 Function
Daniele E. Ejzykowicz, Kristopher M. Locken, Fiona J. Ruiz, Surya P. Manandhar, Daniel K. Olson, Editte Gharakhanian
Curr Genet. Author manuscript; available in PMC 2018 Jun 1.
Published in final edited form as: Curr Genet. 2017 Jun; 63(3): 531–551. Published online 2016 Nov 3. doi: 10.1007/s00294-016-0660-9
PMCID:
PMC5415440
AbstractArticlePDF–2.6M
13.
Structural and functional characterization of KEOPS dimerization by Pcc1 and its role in t6A biosynthesis
Leo C.K. Wan, Monica C. Pillon, Neroshan Thevakumaran, Yulong Sun, Avi Chakrabartty, Alba Guarné, Igor Kurinov, Daniel Durocher, Frank Sicheri
Nucleic Acids Res. 2016 Aug 19; 44(14): 6971–6980. Published online 2016 Jun 14. doi: 10.1093/nar/gkw542
PMCID:
PMC5001605
AbstractArticlePDF–3.5M
14.
An extensive allelic series of Drosophila kae1 mutants reveals diverse and tissue-specific requirements for t6A biogenesis
Ching-Jung Lin, Peter Smibert, Xiaoyu Zhao, Jennifer F. Hu, Johnny Ramroop, Stefanie M. Kellner, Matthew A. Benton, Shubha Govind, Peter C. Dedon, Rolf Sternglanz, Eric C. Lai
RNA. 2015 Dec; 21(12): 2103–2118. doi: 10.1261/rna.053934.115
PMCID:
PMC4647464
AbstractArticlePDF–820K
15.
A quantitative imaging-based screen reveals the exocyst as a network hub connecting endocytosis and exocytosis
Mini Jose, Sylvain Tollis, Deepak Nair, Romain Mitteau, Christophe Velours, Aurelie Massoni-Laporte, Anne Royou, Jean-Baptiste Sibarita, Derek McCusker
Mol Biol Cell. 2015 Jul 1; 26(13): 2519–2534. doi: 10.1091/mbc.E14-11-1527
PMCID:
PMC4571305
AbstractArticlePDF–2.8M
16.
Crystal structures of the Gon7/Pcc1 and Bud32/Cgi121 complexes provide a model for the complete yeast KEOPS complex
Wenhua Zhang, Bruno Collinet, Marc Graille, Marie-Claire Daugeron, Noureddine Lazar, Domenico Libri, Dominique Durand, Herman van Tilbeurgh
Nucleic Acids Res. 2015 Mar 31; 43(6): 3358–3372. Published online 2015 Mar 3. doi: 10.1093/nar/gkv155
PMCID:
PMC4381065
AbstractArticlePDF–5.3M
17.
A Global Protein Kinase and Phosphatase Interaction Network in Yeast
Ashton Breitkreutz, Hyungwon Choi, Jeffrey R. Sharom, Lorrie Boucher, Victor Neduva, Brett Larsen, Zhen-Yuan Lin, Bobby-Joe Breitkreutz, Chris Stark, Guomin Liu, Jessica Ahn, Danielle Dewar-Darch, Teresa Reguly, Xiaojing Tang, Ricardo Almeida, Zhaohui Steve Qin, Tony Pawson, Anne-Claude Gingras, Alexey I. Nesvizhskii, Mike Tyers
Science. Author manuscript; available in PMC 2014 Apr 11.
Published in final edited form as: Science. 2010 May 21; 328(5981): 1043–1046. doi: 10.1126/science.1176495
PMCID:
PMC3983991
AbstractArticlePDF–1.4M
18.
Functional assignment of KEOPS/EKC complex subunits in the biosynthesis of the universal t6A tRNA modification
Ludovic Perrochia, Dorian Guetta, Arnaud Hecker, Patrick Forterre, Tamara Basta
Nucleic Acids Res. 2013 Nov; 41(20): 9484–9499. Published online 2013 Aug 14. doi: 10.1093/nar/gkt720
PMCID:
PMC3814370
AbstractArticlePDF–7.6M
19.
Reconstitution and characterization of eukaryotic N6-threonylcarbamoylation of tRNA using a minimal enzyme system
Leo C. K. Wan, Daniel Y. L. Mao, Dante Neculai, Jonathan Strecker, David Chiovitti, Igor Kurinov, Gennadiy Poda, Neroshan Thevakumaran, Fang Yuan, Rachel K. Szilard, Elena Lissina, Corey Nislow, Amy A. Caudy, Daniel Durocher, Frank Sicheri
Nucleic Acids Res. 2013 Jul; 41(12): 6332–6346. Published online 2013 Apr 25. doi: 10.1093/nar/gkt322
PMCID:
PMC3695523
AbstractArticlePDF–6.4M
20.
A multistep genomic screen identifies new genes required for repair of DNA double-strand breaks in Saccharomyces cerevisiae
Jennifer Summers McKinney, Sunaina Sethi, Jennifer DeMars Tripp, Thuy N Nguyen, Brian A Sanderson, James W Westmoreland, Michael A Resnick, L Kevin Lewis
BMC Genomics. 2013; 14: 251. Published online 2013 Apr 15. doi: 10.1186/1471-2164-14-251
PMCID:
PMC3637596
AbstractArticlePDF–2.0M

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