PMC Links for GEO Profiles (Select 9823482) - PMC

Praveen K. Patnaik, Carine Beaupere, Hanna Barlit, Antonia María Romero, Mitsuhiro Tsuchiya, Michael Muir, María Teresa Martínez-Pastor, Sergi Puig, Matt Kaeberlein, Vyacheslav M. Labunskyy

Cell Rep. Author manuscript; available in PMC 2022 Aug 17.

Published in final edited form as: Cell Rep. 2022 Jul 19; 40(3): 111113. doi: 10.1016/j.celrep.2022.111113

PMCID:: PMC9382658

Abstract Article PDF–1.5M

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 66157105.

The nucleotide sequence of Saccharomyces cerevisiae chromosome XII

M. Johnston, L. Hillier, L. Riles, other members of the Genome Sequencing Center, K. Albermann, B. André, W. Ansorge, V. Benes, M. Brückner, H. Delius, E. Dubois, A. Düsterhöft, K.-D. Entian, M. Floeth, A. Goffeau, U. Hebling, K. Heumann, D. Heuss-Neitzel, H. Hilbert, F. Hilger, K. Kleine, P. Kötter, E. J. Louis, F. Messenguy, H. W. Mewes, T. Miosga, D. Möstl, S. Müller-Auer, U. Nentwich, B. Obermaier, E. Piravandi, T. M. Pohl, D. Portetelle, B. Purnelle, S. Rechmann, M. Rieger, M. Rinke, M. Rose, M. Scharfe, B. Scherens, P. Scholler, C. Schwager, S. Schwarz, A. P. Underwood, L. A. Urrestarazu, M. Vandenbol, P. Verhasselt, F. Vierendeels, M Voet, G. Volckaert, H. Voss, R. Wambutt, E. Wedler, H. Wedler, F. K. Zimmermann, A. Zollner, J. Hani, J. D. Hoheisel

Nature. Author manuscript; available in PMC 2019 Jul 9.

Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 87–90.

PMCID:: PMC6615710

Abstract Article PDF–424K

Select item 62913666.

The cellular economy of the Saccharomyces cerevisiae zinc proteome

Yirong Wang, Erin Weisenhorn, Colin MacDiarmid, Claudia Andreini, Michael Bucci, Janet Taggart, Lucia Banci, Jason Russell, Joshua J. Coon, David J. Eide

Metallomics. Author manuscript; available in PMC 2019 Dec 12.

Published in final edited form as: Metallomics. 2018 Dec 12; 10(12): 1755–1776. doi: 10.1039/c8mt00269j

PMCID:: PMC6291366

Abstract Article PDF–3.0M

Select item 61437387.

Phosphorylation and Proteasome Recognition of the mRNA-Binding Protein Cth2 Facilitates Yeast Adaptation to Iron Deficiency

Antonia M. Romero, Mar Martínez-Pastor, Gang Du, Carme Solé, María Carlos, Sandra V. Vergara, Nerea Sanvisens, James A. Wohlschlegel, David P. Toczyski, Francesc Posas, Eulàlia de Nadal, María T. Martínez-Pastor, Dennis J. Thiele, Sergi Puig

mBio. 2018 Sep-Oct; 9(5): e01694-18. Published online 2018 Sep 18. doi: 10.1128/mBio.01694-18

PMCID:: PMC6143738

Abstract Article PDF–1.8M

Select item 60232328.

Yeast Cth2 protein represses the translation of ARE-containing mRNAs in response to iron deficiency

Lucía Ramos-Alonso, Antonia María Romero, Maria Àngel Soler, Ana Perea-García, Paula Alepuz, Sergi Puig, María Teresa Martínez-Pastor

PLoS Genet. 2018 Jun; 14(6): e1007476. Published online 2018 Jun 18. doi: 10.1371/journal.pgen.1007476

PMCID:: PMC6023232

Abstract Article PDF–5.0M

Select item 57653599.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 566188510.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 560025411.

The Genetic Landscape of a Cell

Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Sep 15.

Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823

PMCID:: PMC5600254

Abstract Article PDF–2.4M

Select item 520434812.

A novel translational control mechanism involving RNA structures within coding sequences

Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez

Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116

Correction in:: Genome Res. 2017 Apr; 27(4): 663.

PMCID:: PMC5204348

Abstract Article PDF–1.3M

Select item 486274013.

A comprehensive analysis of replicative lifespan in 4,698 single-gene deletion strains uncovers conserved mechanisms of aging

Mark A. McCormick, Joe R. Delaney, Mitsuhiro Tsuchiya, Scott Tsuchiyama, Anna Shemorry, Sylvia Sim, Annie Chia-Zong Chou, Umema Ahmed, Daniel Carr, Christopher J. Murakami, Jennifer Schleit, George L. Sutphin, Brian M. Wasko, Christopher F. Bennett, Adrienne M. Wang, Brady Olsen, Richard P. Beyer, Theodor K. Bammler, Donna Prunkard, Simon C. Johnson, Juniper K. Pennypacker, Elroy An, Arieanna Anies, Anthony S. Castanza, Eunice Choi, Nick Dang, Shiena Enerio, Marissa Fletcher, Lindsay Fox, Sarani Goswami, Sean A. Higgins, Molly A. Holmberg, Di Hu, Jessica Hui, Monika Jelic, Ki-Soo Jeong, Elijah Johnston, Emily O. Kerr, Jin Kim, Diana Kim, Katie Kirkland, Shannon Klum, Soumya Kotireddy, Eric Liao, Michael Lim, Michael S. Lin, Winston C. Lo, Dan Lockshon, Hillary A. Miller, Richard M. Moller, Brian Muller, Jonathan Oakes, Diana N. Pak, Zhao Jun Peng, Kim M. Pham, Tom G. Pollard, Prarthana Pradeep, Dillon Pruett, Dilreet Rai, Brett Robison, Ariana A. Rodriguez, Bopharoth Ros, Michael Sage, Manpreet K. Singh, Erica D. Smith, Katie Snead, Amrita Solanky, Benjamin L. Spector, Kristan K. Steffen, Bie Nga Tchao, Marc K. Ting, Helen Vander Wende, Dennis Wang, K. Linnea Welton, Eric A. Westman, Rachel B. Brem, Xin-guang Liu, Yousin Suh, Zhongjun Zhou, Matt Kaeberlein, Brian K. Kennedy

Cell Metab. Author manuscript; available in PMC 2016 Nov 3.

Published in final edited form as: Cell Metab. 2015 Nov 3; 22(5): 895–906. Published online 2015 Oct 8. doi: 10.1016/j.cmet.2015.09.008

PMCID:: PMC4862740

Abstract Article PDF–1.6M

Select item 473275214.

Cth2 Protein Mediates Early Adaptation of Yeast Cells to Oxidative Stress Conditions

Laia Castells-Roca, Jordi Pijuan, Francisco Ferrezuelo, Gemma Bellí, Enrique Herrero

PLoS One. 2016; 11(1): e0148204. Published online 2016 Jan 29. doi: 10.1371/journal.pone.0148204

PMCID:: PMC4732752

Abstract Article PDF–1.6M

Select item 470909615.

Reduced Glucose Sensation Can Increase the Fitness of Saccharomyces cerevisiae Lacking Mitochondrial DNA

Emel Akdoğan, Mehmet Tardu, Görkem Garipler, Gülkız Baytek, İ. Halil Kavakli, Cory D. Dunn

PLoS One. 2016; 11(1): e0146511. Published online 2016 Jan 11. doi: 10.1371/journal.pone.0146511

PMCID:: PMC4709096

Abstract Article PDF–8.2M

Select item 461603916.

Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p

Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt

Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518

PMCID:: PMC4616039

Abstract Article PDF–2.2M

Select item 403211817.

Ubiquitin Ligase Trapping Identifies an SCF^Saf1 Pathway Targeting Unprocessed Vacuolar/Lysosomal Proteins

Kevin G. Mark, Marco Simonetta, Alessio Maiolica, Charles A. Seller, David P. Toczyski

Mol Cell. Author manuscript; available in PMC 2015 Jan 9.

Published in final edited form as: Mol Cell. 2014 Jan 9; 53(1): 148–161. Published online 2014 Jan 2. doi: 10.1016/j.molcel.2013.12.003

PMCID:: PMC4032118

Abstract Article PDF–1.4M

Select item 393436618.

Therapeutic modulation of eIF2a-phosphorylation rescues TDP-43 toxicity in amyotrophic lateral sclerosis disease models

Hyung-Jun Kim, Alya R. Raphael, Eva S. LaDow, Leeanne McGurk, Ross Weber, John Q. Trojanowski, Virginia M.-Y. Lee, Steven Finkbeiner, Aaron D. Gitler, Nancy M. Bonini

Nat Genet. Author manuscript; available in PMC 2014 Aug 1.

Published in final edited form as: Nat Genet. 2014 Feb; 46(2): 152–160. Published online 2013 Dec 15. doi: 10.1038/ng.2853

PMCID:: PMC3934366

Abstract Article PDF–2.1M

Select item 368758619.

Stress profiling of longevity mutants identifies Afg3 as a mitochondrial determinant of cytoplasmic mRNA translation and aging

Joe R. Delaney, Umema Ahmed, Annie Chou, Sylvia Sim, Daniel Carr, Christopher J. Murakami, Jennifer Schleit, George L. Sutphin, Elroy H. An, Anthony Castanza, Marissa Fletcher, Sean Higgins, Monika Jelic, Shannon Klum, Brian Muller, Zhao J. Peng, Dilreet Rai, Vanessa Ros, Minnie Singh, Helen Vander Wende, Brian K. Kennedy, Matt Kaeberlein

Aging Cell. Author manuscript; available in PMC 2014 Feb 1.

Published in final edited form as: Aging Cell. 2013 Feb; 12(1): 156–166. Published online 2012 Dec 25. doi: 10.1111/acel.12032

PMCID:: PMC3687586

Abstract Article PDF–4.5M

Select item 364806920.

Negative Feedback Regulation of the Yeast Cth1 and Cth2 mRNA Binding Proteins Is Required for Adaptation to Iron Deficiency and Iron Supplementation

Mar Martínez-Pastor, Sandra V. Vergara, Sergi Puig, Dennis J. Thiele

Mol Cell Biol. 2013 Jun; 33(11): 2178–2187. doi: 10.1128/MCB.01458-12

PMCID:: PMC3648069

Abstract Article PDF–1.9M

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