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Items: 1 to 20 of 73

1.
Characterization of Cwc2, U6 snRNA, and Prp8 interactions destabilized by Prp16 ATPase at the transition between the first and second steps of splicing
Jadwiga Meissner, Katarzyna Eysmont, Katarzyna Matylla-Kulińska, Maria M. Konarska
RNA. 2024 Sep; 30(9): 1199–1212. doi: 10.1261/rna.079886.123
PMCID:
PMC11331412
AbstractArticlePDF–6.7M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
4.
Misregulation of cell cycle-dependent methylation of budding yeast CENP-A contributes to chromosomal instability
Prashant K. Mishra, Wei-Chun Au, Pedro G. Castineira, Nazrin Ali, John Stanton, Lars Boeckmann, Yoshimitsu Takahashi, Michael Costanzo, Charles Boone, Kerry S. Bloom, Peter H. Thorpe, Munira A. Basrai
Mol Biol Cell. 2023 Sep 1; 34(10): ar99. Published online 2023 Aug 17. doi: 10.1091/mbc.E23-03-0108
PMCID:
PMC10551700
AbstractArticlePDF–3.7M
5.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
6.
Rbp95 binds to 25S rRNA helix H95 and cooperates with the Npa1 complex during early pre-60S particle maturation
Priya Bhutada, Sébastien Favre, Mariam Jaafar, Jutta Hafner, Laura Liesinger, Stefan Unterweger, Karin Bischof, Barbara Darnhofer, Devanarayanan Siva Sankar, Gerald Rechberger, Raghida Abou Merhi, Simon Lebaron, Ruth Birner-Gruenberger, Dieter Kressler, Anthony K Henras, Brigitte Pertschy
Nucleic Acids Res. 2022 Sep 23; 50(17): 10053–10077. Published online 2022 Aug 26. doi: 10.1093/nar/gkac724
PMCID:
PMC9508819
AbstractArticlePDF–16M
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
eIF4G is retained on ribosomes elongating and terminating on short upstream ORFs to control reinitiation in yeast
Mahabub Pasha Mohammad, Anna Smirnova, Stanislava Gunišová, Leoš Shivaya Valášek
Nucleic Acids Res. 2021 Sep 7; 49(15): 8743–8756. Published online 2021 Aug 5. doi: 10.1093/nar/gkab652
PMCID:
PMC8421214
AbstractArticlePDF–872K
9.
Saccharomyces cerevisiae Ecm2 modulates the catalytic steps of pre-mRNA splicing
Clarisse van der Feltz, Brandon Nikolai, Charles Schneider, Joshua C. Paulson, Xingyang Fu, Aaron A. Hoskins
RNA. 2021 May; 27(5): 591–603. doi: 10.1261/rna.077727.120
PMCID:
PMC8051269
AbstractArticlePDF–6.5M
10.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
11.
RNA-binding and prion domains: the Yin and Yang of phase separation
Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia
Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681
PMCID:
PMC7515694
AbstractArticlePDF–3.1M
12.
Impact of cancer-associated mutations in Hsh155/SF3b1 HEAT repeats 9-12 on pre-mRNA splicing in Saccharomyces cerevisiae
Harpreet Kaur, Brent Groubert, Joshua C. Paulson, Sarah McMillan, Aaron A. Hoskins
PLoS One. 2020; 15(4): e0229315. Published online 2020 Apr 22. doi: 10.1371/journal.pone.0229315
PMCID:
PMC7176370
AbstractArticlePDF–2.7M
13.
Structural analysis of the intrinsically disordered splicing factor Spp2 and its binding to the DEAH-box ATPase Prp2
Florian Hamann, Andreas Schmitt, Filippo Favretto, Romina Hofele, Piotr Neumann, ShengQi Xiang, Henning Urlaub, Markus Zweckstetter, Ralf Ficner
Proc Natl Acad Sci U S A. 2020 Feb 11; 117(6): 2948–2956. Published online 2020 Jan 23. doi: 10.1073/pnas.1907960117
PMCID:
PMC7022188
AbstractArticlePDF–1.8M
14.
Functional analysis of Hsh155/SF3b1 interactions with the U2 snRNA/branch site duplex
Tucker J. Carrocci, Joshua C. Paulson, Aaron A. Hoskins
RNA. 2018 Aug; 24(8): 1028–1040. doi: 10.1261/rna.065664.118
PMCID:
PMC6049509
AbstractArticlePDF–5.9M
15.
The RES complex is required for efficient transformation of the precatalytic B spliceosome into an activated Bact complex
Penghui Bao, Cindy L. Will, Henning Urlaub, Kum-Loong Boon, Reinhard Lührmann
Genes Dev. 2017 Dec 1; 31(23-24): 2416–2429. doi: 10.1101/gad.308163.117
PMCID:
PMC5795787
AbstractArticlePDF–7.6M
16.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
17.
Yeast Prp2 liberates the 5′ splice site and the branch site adenosine for catalysis of pre-mRNA splicing
Penghui Bao, Claudia Höbartner, Klaus Hartmuth, Reinhard Lührmann
RNA. 2017 Dec; 23(12): 1770–1779. doi: 10.1261/rna.063115.117
PMCID:
PMC5688998
AbstractArticlePDF–5.4M
18.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
19.
Structural toggle in the RNaseH domain of Prp8 helps balance splicing fidelity and catalytic efficiency
Megan Mayerle, Madhura Raghavan, Sarah Ledoux, Argenta Price, Nicholas Stepankiw, Haralambos Hadjivassiliou, Erica A. Moehle, Senén D. Mendoza, Jeffrey A. Pleiss, Christine Guthrie, John Abelson
Proc Natl Acad Sci U S A. 2017 May 2; 114(18): 4739–4744. Published online 2017 Apr 17. doi: 10.1073/pnas.1701462114
PMCID:
PMC5422793
AbstractArticlePDF–1016K
20.
SF3b1 mutations associated with myelodysplastic syndromes alter the fidelity of branchsite selection in yeast
Tucker J. Carrocci, Douglas M. Zoerner, Joshua C. Paulson, Aaron A. Hoskins
Nucleic Acids Res. 2017 May 5; 45(8): 4837–4852. Published online 2017 Jan 6. doi: 10.1093/nar/gkw1349
PMCID:
PMC5416834
AbstractArticlePDF–5.6M

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