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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107988582.

Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking

Lucas J. Marmorale, Huan Jin, Thomas G. Reidy, Brandon Palomino-Alonso, Christopher J. Zysnarski, Fatima Jordan-Javed, Sagar Lahiri, Mara C. Duncan

J Cell Biol. 2024 Mar 4; 223(3): e202309047. Published online 2024 Jan 19. doi: 10.1083/jcb.202309047

PMCID:: PMC10798858

Abstract Article PDF–6.4M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 101624164.

Exploring the consequences of redirecting an exocytic Rab onto endocytic vesicles

Xia Li, Dongmei Liu, Eric Griffis, Peter Novick

Mol Biol Cell. 2023 May 1; 34(5): ar38. Published online 2023 Apr 11. doi: 10.1091/mbc.E23-01-0037

PMCID:: PMC10162416

Abstract Article PDF–9.3M

Select item 99296555.

Allosteric regulation of exocyst: Discrete activation of tethering by two spatial signals

Brittany K. Miller, Guendalina Rossi, Sara Hudson, David Cully, Richard W. Baker, Patrick Brennwald

J Cell Biol. 2023 Mar 6; 222(3): e202206108. Published online 2023 Feb 2. doi: 10.1083/jcb.202206108

PMCID:: PMC9929655

Abstract Article PDF–6.1M

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 67157747.

Network Rewiring of Homologous Recombination Enzymes during Mitotic Proliferation and Meiosis

Philipp Wild, Aitor Susperregui, Ilaria Piazza, Christian Dörig, Ashwini Oke, Meret Arter, Miyuki Yamaguchi, Alexander T. Hilditch, Karla Vuina, Ki Choi Chan, Tatiana Gromova, James E. Haber, Jennifer C. Fung, Paola Picotti, Joao Matos

Mol Cell. 2019 Aug 22; 75(4): 859–874.e4. doi: 10.1016/j.molcel.2019.06.022

PMCID:: PMC6715774

Abstract Article

Select item 63249388.

A steric gating mechanism dictates the substrate specificity of a Rab-GEF

Laura L. Thomas, Solveig A. van der Vegt, J. Christopher Fromme

Dev Cell. Author manuscript; available in PMC 2020 Jan 7.

Published in final edited form as: Dev Cell. 2019 Jan 7; 48(1): 100–114.e9. Published online 2018 Dec 6. doi: 10.1016/j.devcel.2018.11.013

PMCID:: PMC6324938

Abstract Article PDF–2.9M

Select item 59225289.

Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs

Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen

PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319

PMCID:: PMC5922528

Abstract Article PDF–7.1M

Select item 576535910.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 566188511.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 564271112.

Rewiring a Rab regulatory network reveals a possible inhibitory role for the vesicle tether, Uso1

Hua Yuan, Saralin Davis, Susan Ferro-Novick, Peter Novick

Proc Natl Acad Sci U S A. 2017 Oct 10; 114(41): E8637–E8645. Published online 2017 Sep 25. doi: 10.1073/pnas.1708394114

PMCID:: PMC5642711

Abstract Article PDF–1.6M

Select item 498516213.

Polarized Exocytosis Induces Compensatory Endocytosis by Sec4p-Regulated Cortical Actin Polymerization

Jesper Johansen, Gabriel Alfaro, Christopher T. Beh

PLoS Biol. 2016 Aug; 14(8): e1002534. Published online 2016 Aug 15. doi: 10.1371/journal.pbio.1002534

PMCID:: PMC4985162

Abstract Article PDF–4.1M

Select item 490525814.

A pull-down procedure for the identification of unknown GEFs for small GTPases

Daniel Koch, Amrita Rai, Imtiaz Ali, Nathalie Bleimling, Timon Friese, Andreas Brockmeyer, Petra Janning, Bruno Goud, Aymelt Itzen, Matthias P. Müller, Roger S. Goody

Small GTPases. 2016 Apr-Jun; 7(2): 93–106. Published online 2016 Feb 26. doi: 10.1080/21541248.2016.1156803

PMCID:: PMC4905258

Abstract Article PDF–1.1M

Select item 486983515.

One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy

Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner

Nat Methods. Author manuscript; available in PMC 2016 Sep 22.

Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795

PMCID:: PMC4869835

Abstract Article PDF–2.7M

Select item 483823116.

Kin2, the Budding Yeast Ortholog of Animal MARK/PAR-1 Kinases, Localizes to the Sites of Polarized Growth and May Regulate Septin Organization and the Cell Wall

Si-Min Yuan, Wen-Chao Nie, Fei He, Zhi-Wen Jia, Xiang-Dong Gao

PLoS One. 2016; 11(4): e0153992. Published online 2016 Apr 20. doi: 10.1371/journal.pone.0153992

PMCID:: PMC4838231

Abstract Article PDF–8.6M

Select item 475282417.

Subunit connectivity, assembly determinants, and architecture of the yeast exocyst complex

Margaret R. Heider, Mingyu Gu, Caroline M. Duffy, Anne M. Mirza, Laura L. Marcotte, Alexandra C. Walls, Nicholas Farrall, Zhanna Hakhverdyan, Mark C. Field, Michael P. Rout, Adam Frost, Mary Munson

Nat Struct Mol Biol. Author manuscript; available in PMC 2016 Jul 1.

Published in final edited form as: Nat Struct Mol Biol. 2016 Jan; 23(1): 59–66. Published online 2015 Dec 14. doi: 10.1038/nsmb.3146

PMCID:: PMC4752824

Abstract Article PDF–1.5M

Select item 475092718.

The casein kinases Yck1p and Yck2p act in the secretory pathway, in part, by regulating the Rab exchange factor Sec2p

Danièle Stalder, Peter J. Novick

Mol Biol Cell. 2016 Feb 15; 27(4): 686–701. doi: 10.1091/mbc.E15-09-0651

PMCID:: PMC4750927

Abstract Article PDF–789K

Select item 470301219.

Target selection by natural and redesigned PUF proteins

Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens

Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112

PMCID:: PMC4703012

Abstract Article PDF–1.3M

Select item 453143920.

New insights into the molecular mechanism of the Rab GTPase Sec4p activation

Fabio C. Rinaldi, Michael Packer, Ruth Collins

BMC Struct Biol. 2015; 15: 14. Published online 2015 Aug 12. doi: 10.1186/s12900-015-0041-5

PMCID:: PMC4531439

Abstract Article PDF–2.4M

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