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Items: 1 to 20 of 28

1.
The transcription factor NF-YA is crucial for neural progenitor maintenance during brain development
Tomoyuki Yamanaka, Masaru Kurosawa, Aya Yoshida, Tomomi Shimogori, Akiko Hiyama, Sankar N. Maity, Nobutaka Hattori, Hideaki Matsui, Nobuyuki Nukina
J Biol Chem. 2024 Feb; 300(2): 105629. Published online 2024 Jan 8. doi: 10.1016/j.jbc.2024.105629
PMCID:
PMC10839448
AbstractArticlePDF–5.2M
2.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
3.
Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function
Tingting Zhang, Wei Du, Andrew F. Wilson, Satoshi H. Namekawa, Paul R. Andreassen, Amom Ruhikanta Meetei, Qishen Pang
Sci Rep. 2017; 7: 45626. Published online 2017 Apr 5. doi: 10.1038/srep45626
PMCID:
PMC5381226
AbstractArticlePDF–1.4M
4.
A high resolution spatiotemporal atlas of gene expression of the developing mouse brain
Carol L. Thompson, Lydia Ng, Vilas Menon, Salvador Martinez, Chang-Kyu Lee, Katie Glattfelder, Susan M. Sunkin, Alex Henry, Christopher Lau, Chinh Dang, Raquel Garcia-Lopez, Almudena Martinez-Ferre, Ana Pombero, John L.R. Rubenstein, Wayne B. Wakeman, John Hohmann, Nick Dee, Andrew J. Sodt, Rob Young, Kimberly Smith, Thuc-Nghi Nguyen, Jolene Kidney, Leonard Kuan, Andreas Jeromin, Ajamete Kaykas, Jeremy Miller, Damon Page, Geri Orta, Amy Bernard, Zackery Riley, Simon Smith, Paul Wohnoutka, Mike Hawrylycz, Luis Puelles, Allan R. Jones
Neuron. Author manuscript; available in PMC 2015 Jul 16.
Published in final edited form as: Neuron. 2014 Jul 16; 83(2): 309–323. Published online 2014 Jun 19. doi: 10.1016/j.neuron.2014.05.033
PMCID:
PMC4319559
AbstractArticlePDF–3.0M
5.
Transforming Growth Factor β1 (TGF-β1) Enhances Expression of Profibrotic Genes through a Novel Signaling Cascade and MicroRNAs in Renal Mesangial Cells
Nancy E. Castro, Mitsuo Kato, Jung Tak Park, Rama Natarajan
J Biol Chem. 2014 Oct 17; 289(42): 29001–29013. Published online 2014 Sep 9. doi: 10.1074/jbc.M114.600783
PMCID:
PMC4200256
AbstractArticlePDF–878K
6.
Histone-fold domain protein NF-Y promotes chromatin accessibility for cell type-specific master transcription factors
Andrew J. Oldfield, Pengyi Yang, Amanda E Conway, Senthilkumar Cinghu, Johannes M. Freudenberg, Sailu Yellaboina, Raja Jothi
Mol Cell. Author manuscript; available in PMC 2015 Sep 4.
Published in final edited form as: Mol Cell. 2014 Sep 4; 55(5): 708–722. Published online 2014 Aug 14. doi: 10.1016/j.molcel.2014.07.005
PMCID:
PMC4157648
AbstractArticlePDF–1.8M
7.
Robo1 Modulates Proliferation and Neurogenesis in the Developing Neocortex
Mason L. Yeh, Yuko Gonda, Mathilda T. M. Mommersteeg, Melissa Barber, Athena R. Ypsilanti, Carina Hanashima, John G. Parnavelas, William D. Andrews
J Neurosci. 2014 Apr 16; 34(16): 5717–5731. doi: 10.1523/JNEUROSCI.4256-13.2014
PMCID:
PMC3988420
AbstractArticlePDF–5.2M
8.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
9.
A Systems Approach Reveals that the Myogenesis Genome Network Is Regulated by the Transcriptional Repressor RP58
Shigetoshi Yokoyama, Yoshiaki Ito, Hiroe Ueno-Kudoh, Hirohito Shimizu, Kenta Uchibe, Sonia Albini, Kazuhiko Mitsuoka, Shigeru Miyaki, Minako Kiso, Akane Nagai, Tomohiro Hikata, Tadahiro Osada, Noritsugu Fukuda, Satoshi Yamashita, Daisuke Harada, Valeria Mezzano, Masataka Kasai, Pier Lorenzo Puri, Yoshihide Hayashizaki, Haruo Okado, Megumi Hashimoto, Hiroshi Asahara
Dev Cell. Author manuscript; available in PMC 2011 Jun 7.
Published in final edited form as: Dev Cell. 2009 Dec; 17(6): 836–848. doi: 10.1016/j.devcel.2009.10.011
PMCID:
PMC3110151
AbstractArticlePDF–2.0M
10.
A High-Resolution Anatomical Atlas of the Transcriptome in the Mouse Embryo
Graciana Diez-Roux, Sandro Banfi, Marc Sultan, Lars Geffers, Santosh Anand, David Rozado, Alon Magen, Elena Canidio, Massimiliano Pagani, Ivana Peluso, Nathalie Lin-Marq, Muriel Koch, Marchesa Bilio, Immacolata Cantiello, Roberta Verde, Cristian De Masi, Salvatore A. Bianchi, Juliette Cicchini, Elodie Perroud, Shprese Mehmeti, Emilie Dagand, Sabine Schrinner, Asja Nürnberger, Katja Schmidt, Katja Metz, Christina Zwingmann, Norbert Brieske, Cindy Springer, Ana Martinez Hernandez, Sarah Herzog, Frauke Grabbe, Cornelia Sieverding, Barbara Fischer, Kathrin Schrader, Maren Brockmeyer, Sarah Dettmer, Christin Helbig, Violaine Alunni, Marie-Annick Battaini, Carole Mura, Charlotte N. Henrichsen, Raquel Garcia-Lopez, Diego Echevarria, Eduardo Puelles, Elena Garcia-Calero, Stefan Kruse, Markus Uhr, Christine Kauck, Guangjie Feng, Nestor Milyaev, Chuang Kee Ong, Lalit Kumar, MeiSze Lam, Colin A. Semple, Attila Gyenesei, Stefan Mundlos, Uwe Radelof, Hans Lehrach, Paolo Sarmientos, Alexandre Reymond, Duncan R. Davidson, Pascal Dollé, Stylianos E. Antonarakis, Marie-Laure Yaspo, Salvador Martinez, Richard A. Baldock, Gregor Eichele, Andrea Ballabio
PLoS Biol. 2011 Jan; 9(1): e1000582. Published online 2011 Jan 18. doi: 10.1371/journal.pbio.1000582
PMCID:
PMC3022534
AbstractArticlePDF–3.8M
11.
An Expanded Oct4 Interaction Network: Implications for Stem Cell Biology, Development, and Disease
Mercedes Pardo, Benjamin Lang, Lu Yu, Haydn Prosser, Allan Bradley, M. Madan Babu, Jyoti Choudhary
Cell Stem Cell. 2010 Apr 2; 6(4): 382–395. doi: 10.1016/j.stem.2010.03.004
PMCID:
PMC2860244
AbstractArticle
12.
Peli1 facilitates TRIF-dependent Toll-like receptor signaling and proinflammatory cytokine production
Mikyoung Chang, Wei Jin, Shao-Cong Sun
Nat Immunol. Author manuscript; available in PMC 2010 Apr 1.
Published in final edited form as: Nat Immunol. 2009 Oct; 10(10): 1089–1095. Published online 2009 Sep 6. doi: 10.1038/ni.1777
PMCID:
PMC2748822
AbstractArticlePDF–4.3M
13.
Large-scale gene trapping in C57BL/6N mouse embryonic stem cells
Gwenn M. Hansen, Diane C. Markesich, Michael B. Burnett, Qichao Zhu, Karen M. Dionne, Lizabeth J. Richter, Richard H. Finnell, Arthur T. Sands, Brian P. Zambrowicz, Alejandro Abuin
Genome Res. 2008 Oct; 18(10): 1670–1679. doi: 10.1101/gr.078352.108
PMCID:
PMC2556270
AbstractArticlePDF–493K
14.
Bone Morphogenetic Protein 2 Mediates Dentin Sialophosphoprotein Expression and Odontoblast Differentiation via NF-Y Signaling
Shuo Chen, Jelica Gluhak-Heinrich, Marcos Martinez, Tong Li, Yimin Wu, Hui-Hsiu Chuang, Lei Chen, Juan Dong, Isabel Gay, Mary MacDougall
J Biol Chem. 2008 Jul 11; 283(28): 19359–19370. doi: 10.1074/jbc.M709492200
PMCID:
PMC2443643
AbstractArticlePDF–787K
15.
Cracking the egg: molecular dynamics and evolutionary aspects of the transition from the fully grown oocyte to embryo
Alexei V. Evsikov, Joel H. Graber, J. Michael Brockman, Aleš Hampl, Andrea E. Holbrook, Priyam Singh, John J. Eppig, Davor Solter, Barbara B. Knowles
Genes Dev. 2006 Oct 1; 20(19): 2713–2727. doi: 10.1101/gad.1471006
PMCID:
PMC1578697
AbstractArticlePDF–1.7M
16.
Subunits of the Heterotrimeric Transcription Factor NF-Y Are Imported into the Nucleus by Distinct Pathways Involving Importin β and Importin 13
Joerg Kahle, Matthias Baake, Detlef Doenecke, Werner Albig
Mol Cell Biol. 2005 Jul; 25(13): 5339–5354. doi: 10.1128/MCB.25.13.5339-5354.2005
PMCID:
PMC1157003
AbstractArticlePDF–978K
17.
Transcriptional modulation of the pre-implantation embryo-specific Rnf35 gene by the Y-box protein NF-Y/CBF
Chiu-Jung Huang, Shinn-Chih Wu, Kong-Bung Choo
Biochem J. 2005 Apr 15; 387(Pt 2): 367–375. Prepublished online 2004 Nov 1. Published online 2005 Apr 5. doi: 10.1042/BJ20041364
PMCID:
PMC1134964
AbstractArticlePDF–392K
18.
Direct p53 Transcriptional Repression: In Vivo Analysis of CCAAT-Containing G2/M Promoters
Carol Imbriano, Aymone Gurtner, Fabienne Cocchiarella, Silvia Di Agostino, Valentina Basile, Monica Gostissa, Matthias Dobbelstein, Giannino Del Sal, Giulia Piaggio, Roberto Mantovani
Mol Cell Biol. 2005 May; 25(9): 3737–3751. doi: 10.1128/MCB.25.9.3737-3751.2005
PMCID:
PMC1084283
AbstractArticlePDF–886K
19.
NF-Y Is Essential for the Recruitment of RNA Polymerase II and Inducible Transcription of Several CCAAT Box-Containing Genes
Yasuaki Kabe, Joe Yamada, Hitoshi Uga, Yuki Yamaguchi, Tadashi Wada, Hiroshi Handa
Mol Cell Biol. 2005 Jan; 25(1): 512–522. doi: 10.1128/MCB.25.1.512-522.2005
PMCID:
PMC538762
AbstractArticlePDF–597K
20.
The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 Oct; 14(10b): 2121–2127. doi: 10.1101/gr.2596504
Correction in:
Genome Res. 2006 Jun; 16(6): 804.
PMCID:
PMC528928
AbstractArticlePDF–140K

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