PMC Links for GEO Profiles (Select 99306967) - PMC

Sotirios Efstathiou, Franziska Ottens, Lena-Sophie Schütter, Sonia Ravanelli, Nikolaos Charmpilas, Aljona Gutschmidt, Jérémie Le Pen, Niels H. Gehring, Eric A. Miska, Jorge Bouças, Thorsten Hoppe

Nat Cell Biol. 2022; 24(12): 1714–1725. Published online 2022 Dec 5. doi: 10.1038/s41556-022-01025-4

PMCID:: PMC9729107

Abstract Article PDF–7.1M

Select item 94378485.

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans

Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono

J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343

PMCID:: PMC9437848

Abstract Article PDF–2.0M

Select item 90207166.

A modified TurboID approach identifies tissue-specific centriolar components in C. elegans

Elisabeth Holzer, Cornelia Rumpf-Kienzl, Sebastian Falk, Alexander Dammermann

PLoS Genet. 2022 Apr; 18(4): e1010150. Published online 2022 Apr 20. doi: 10.1371/journal.pgen.1010150

Correction in:: PLoS Genet. 2023 Feb; 19(2): e1010645.

PMCID:: PMC9020716

Abstract Article PDF–2.0M

Select item 84467937.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Abstract Article PDF–1.6M

Select item 83311838.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 79951769.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 790176910.

The conserved transmembrane protein TMEM-39 coordinates with COPII to promote collagen secretion and regulate ER stress response

Zhe Zhang, Shuo Luo, Guilherme Oliveira Barbosa, Meirong Bai, Thomas B. Kornberg, Dengke K. Ma

PLoS Genet. 2021 Feb; 17(2): e1009317. Published online 2021 Feb 1. doi: 10.1371/journal.pgen.1009317

PMCID:: PMC7901769

Abstract Article PDF–2.6M

Select item 785231011.

The extracellular matrix phenome across species

Cyril Statzer, Collin Y. Ewald

Matrix Biol Plus. 2020 Nov; 8: 100039. Published online 2020 Jun 23. doi: 10.1016/j.mbplus.2020.100039

PMCID:: PMC7852310

Abstract Article PDF–6.5M

Select item 765282612.

Roles for the RNA polymerase III regulator MAFR-1 in regulating sperm quality in Caenorhabditis elegans

Amy M. Hammerquist, Sean P. Curran

Sci Rep. 2020; 10: 19367. Published online 2020 Nov 9. doi: 10.1038/s41598-020-76423-5

PMCID:: PMC7652826

Abstract Article PDF–3.7M

Select item 727478913.

Lysosome activity is modulated by multiple longevity pathways and is important for lifespan extension in C. elegans

Yanan Sun, Meijiao Li, Dongfeng Zhao, Xin Li, Chonglin Yang, Xiaochen Wang

eLife. 2020; 9: e55745. Published online 2020 Jun 2. doi: 10.7554/eLife.55745

PMCID:: PMC7274789

Abstract Article PDF–8.1M

Select item 701568814.

Broadly conserved roles of TMEM131 family proteins in intracellular collagen assembly and secretory cargo trafficking

Zhe Zhang, Meirong Bai, Guilherme Oliveira Barbosa, Andrew Chen, Yuehua Wei, Shuo Luo, Xin Wang, Bingying Wang, Tatsuya Tsukui, Hao Li, Dean Sheppard, Thomas B. Kornberg, Dengke K. Ma

Sci Adv. 2020 Feb; 6(7): eaay7667. Published online 2020 Feb 12. doi: 10.1126/sciadv.aay7667

PMCID:: PMC7015688

Abstract Article PDF–844K

Select item 688050815.

Peripheral cathepsin L inhibition induces fat loss in C. elegans and mice through promoting central serotonin synthesis

Yan Lin, Bin Bao, Hao Yin, Xin Wang, Airong Feng, Lin Zhao, Xianqi Nie, Nan Yang, Guo-Ping Shi, Jian Liu

BMC Biol. 2019; 17: 93. Published online 2019 Nov 26. doi: 10.1186/s12915-019-0719-4

PMCID:: PMC6880508

Abstract Article PDF–3.5M

Select item 635519816.

SUMO peptidase ULP-4 regulates mitochondrial UPR-mediated innate immunity and lifespan extension

Kaiyu Gao, Yi Li, Shumei Hu, Ying Liu

eLife. 2019; 8: e41792. Published online 2019 Jan 15. doi: 10.7554/eLife.41792

PMCID:: PMC6355198

Abstract Article PDF–3.6M

Select item 621659017.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 613707618.

FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells

Ena Kolundzic, Andreas Ofenbauer, Selman I. Bulut, Bora Uyar, Gülkiz Baytek, Anne Sommermeier, Stefanie Seelk, Mei He, Antje Hirsekorn, Dubravka Vucicevic, Altuna Akalin, Sebastian Diecke, Scott A. Lacadie, Baris Tursun

Dev Cell. 2018 Sep 10; 46(5): 611–626.e12. doi: 10.1016/j.devcel.2018.07.006