PMC Links for GEO Profiles (Select 99372700) - PMC

Select item 108029521.

Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly

Marcos Schaan Profes, Araven Tiroumalechetty, Neel Patel, Stephanie S. Lauar, Simone Sidoli, Peri T. Kurshan

PLoS Biol. 2024 Jan; 22(1): e3002466. Published online 2024 Jan 22. doi: 10.1371/journal.pbio.3002466

PMCID:: PMC10802952

Abstract Article PDF–2.7M

Select item 107611212.

CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing

Doreen I. Lugano, Lindsey N. Barrett, Dale Chaput, Margaret A. Park, Sandy D. Westerheide

RNA Biol. 2024; 21(1): 1–11. Published online 2023 Dec 21. doi: 10.1080/15476286.2023.2289707

PMCID:: PMC10761121

Abstract Article PDF–2.5M

Select item 101674813.

Systems‐level transcriptional regulation of Caenorhabditis elegans metabolism

Shivani Nanda, Marc‐Antoine Jacques, Wen Wang, Chad L Myers, L Safak Yilmaz, Albertha JM Walhout

Mol Syst Biol. 2023 May; 19(5): e11443. Published online 2023 Mar 21. doi: 10.15252/msb.202211443

PMCID:: PMC10167481

Abstract Article PDF–1.6M

Select item 94378484.

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans

Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono

J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343

PMCID:: PMC9437848

Abstract Article PDF–2.0M

Select item 84467935.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Abstract Article PDF–1.6M

Select item 83311836.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 79951767.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 68273688.

Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules

Elisabeth A. Marnik, J. Heath Fuqua, Catherine S. Sharp, Jesse D. Rochester, Emily L. Xu, Sarah E. Holbrook, Dustin L. Updike

Genetics. 2019 Nov; 213(3): 923–939. Published online 2019 Sep 10. doi: 10.1534/genetics.119.302670

PMCID:: PMC6827368

Abstract Article PDF–4.0M

Select item 68261459.

The conserved histone chaperone LIN‐53 is required for normal lifespan and maintenance of muscle integrity in Caenorhabditis elegans

Stefanie Müthel, Bora Uyar, Mei He, Anne Krause, Burcu Vitrinel, Selman Bulut, Djordje Vasiljevic, Iris Marchal, Stefan Kempa, Altuna Akalin, Baris Tursun

Aging Cell. 2019 Dec; 18(6): e13012. Published online 2019 Aug 9. doi: 10.1111/acel.13012

PMCID:: PMC6826145

Abstract Article PDF–3.0M

Select item 621659010.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 617930711.

Non-proteolytic activity of 19S proteasome subunit RPT-6 regulates GATA transcription during response to infection

Abiola O. Olaitan, Alejandro Aballay

PLoS Genet. 2018 Sep; 14(9): e1007693. Published online 2018 Sep 28. doi: 10.1371/journal.pgen.1007693

PMCID:: PMC6179307

Abstract Article PDF–14M

Select item 498780812.

Cell size and fat content of dietary-restricted Caenorhabditis elegans are regulated by ATX-2, an mTOR repressor

Daniel Z. Bar, Chayki Charar, Jehudith Dorfman, Tam Yadid, Lionel Tafforeau, Denis L. J. Lafontaine, Yosef Gruenbaum

Proc Natl Acad Sci U S A. 2016 Aug 9; 113(32): E4620–E4629. Published online 2016 Jul 25. doi: 10.1073/pnas.1512156113

PMCID:: PMC4987808

Abstract Article PDF–2.0M

Select item 384382213.

RNA-binding protein GLD-1/quaking genetically interacts with the mir-35 and the let-7 miRNA pathways in Caenorhabditis elegans

Alper Akay, Ashley Craig, Nicolas Lehrbach, Mark Larance, Ehsan Pourkarimi, Jane E. Wright, Angus Lamond, Eric Miska, Anton Gartner

Open Biol. 2013 Nov; 3(11): 130151. doi: 10.1098/rsob.130151

PMCID:: PMC3843822

Abstract Article PDF–1.1M

Select item 360267214.

Comparative genomics and functional study of lipid metabolic genes in Caenorhabditis elegans

Yuru Zhang, Xiaoju Zou, Yihong Ding, Haizhen Wang, Xiaoyun Wu, Bin Liang

BMC Genomics. 2013; 14: 164. Published online 2013 Mar 12. doi: 10.1186/1471-2164-14-164

PMCID:: PMC3602672

Abstract Article PDF–1.8M

Select item 310207715.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 189461416.

Fatty Acid Desaturation and the Regulation of Adiposity in Caenorhabditis elegans

Trisha J. Brock, John Browse, Jennifer L. Watts

Genetics. 2007 Jun; 176(2): 865–875. doi: 10.1534/genetics.107.071860

PMCID:: PMC1894614

Abstract Article PDF–1.6M

Select item 169894917.

A Map of the Interactome Network of the Metazoan C. elegans

Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal

Science. Author manuscript; available in PMC 2006 Dec 14.

Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403

PMCID:: PMC1698949

Abstract Article PDF–1.4M

Select item 120134418.

A Caenorhabditis elegans nutrient response system partially dependent on nuclear receptor NHR-49

Marc R. Van Gilst, Haralambos Hadjivassiliou, Keith R. Yamamoto

Proc Natl Acad Sci U S A. 2005 Sep 20; 102(38): 13496–13501. Published online 2005 Sep 12. doi: 10.1073/pnas.0506234102

PMCID:: PMC1201344

Abstract Article PDF–673K

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