PMC Links for GEO Profiles (Select 99437343) - PMC

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Items: 20

Select item 108029521.

Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly

Marcos Schaan Profes, Araven Tiroumalechetty, Neel Patel, Stephanie S. Lauar, Simone Sidoli, Peri T. Kurshan

PLoS Biol. 2024 Jan; 22(1): e3002466. Published online 2024 Jan 22. doi: 10.1371/journal.pbio.3002466

PMCID:: PMC10802952

Abstract Article PDF–2.7M

Select item 105756712.

azyx-1 is a new gene that overlaps with zyxin and affects its translation in C. elegans, impacting muscular integrity and locomotion

Bhavesh S. Parmar, Amanda Kieswetter, Ellen Geens, Elke Vandewyer, Christina Ludwig, Liesbet Temmerman

PLoS Biol. 2023 Sep; 21(9): e3002300. Published online 2023 Sep 15. doi: 10.1371/journal.pbio.3002300

PMCID:: PMC10575671

Abstract Article PDF–1.9M

Select item 98340563.

Inheritance of paternal DNA damage by histone-mediated repair restriction

Siyao Wang, David H. Meyer, Björn Schumacher

Nature. 2023; 613(7943): 365–374. Published online 2022 Dec 21. doi: 10.1038/s41586-022-05544-w

PMCID:: PMC9834056

Abstract Article PDF–23M

Select item 84467934.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Abstract Article PDF–1.6M

Select item 83311835.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 79951766.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 66389667.

The demethylase NMAD-1 regulates DNA replication and repair in the Caenorhabditis elegans germline

Simon Yuan Wang, Hui Mao, Hiroki Shibuya, Satoru Uzawa, Zach Klapholz O’Brown, Sage Wesenberg, Nara Shin, Takamune T. Saito, Jinmin Gao, Barbara J. Meyer, Monica P. Colaiácovo, Eric Lieberman Greer

PLoS Genet. 2019 Jul; 15(7): e1008252. Published online 2019 Jul 8. doi: 10.1371/journal.pgen.1008252

PMCID:: PMC6638966

Abstract Article PDF–2.6M

Select item 62165908.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 56545259.

Linker histones: Novel insights into structure-specific recognition of the nucleosome

Amber R. Cutter, Jeffrey J. Hayes

Biochem Cell Biol. Author manuscript; available in PMC 2017 Oct 24.

Published in final edited form as: Biochem Cell Biol. 2017 Apr; 95(2): 171–178. Published online 2016 Jun 29. doi: 10.1139/bcb-2016-0097

PMCID:: PMC5654525

Abstract Article PDF–498K

Select item 530527010.

β-Integrin de-phosphorylation by the Density-Enhanced Phosphatase DEP-1 attenuates EGFR signaling in C. elegans

Michael Walser, Christoph Alois Umbricht, Erika Fröhli, Paolo Nanni, Alex Hajnal

PLoS Genet. 2017 Jan; 13(1): e1006592. Published online 2017 Jan 30. doi: 10.1371/journal.pgen.1006592

PMCID:: PMC5305270

Abstract Article PDF–2.8M

Select item 494261211.

The RNA-binding protein repertoire of Arabidopsis thaliana

Claudius Marondedze, Ludivine Thomas, Natalia L. Serrano, Kathryn S. Lilley, Chris Gehring

Sci Rep. 2016; 6: 29766. Published online 2016 Jul 11. doi: 10.1038/srep29766

PMCID:: PMC4942612

Abstract Article PDF–1.2M

Select item 370444612.

Histone H1 and heterochromatin protein 1 (HP1) regulate specific gene expression and not global transcription

Monika Jedrusik-Bode

Worm. 2013 Apr 1; 2(2): e23703. Published online 2013 Apr 1. doi: 10.4161/worm.23703

PMCID:: PMC3704446

Abstract Article PDF–324K

Select item 344163913.

Transcriptional Repression of Hox Genes by C. elegans HP1/HPL and H1/HIS-24

Maja Studencka, Radosław Wesołowski, Lennart Opitz, Gabriela Salinas-Riester, Jacek R. Wisniewski, Monika Jedrusik-Bode

PLoS Genet. 2012 Sep; 8(9): e1002940. Published online 2012 Sep 13. doi: 10.1371/journal.pgen.1002940

PMCID:: PMC3441639

Abstract Article PDF–6.5M

Select item 325576214.

Novel Roles of Caenorhabditis elegans Heterochromatin Protein HP1 and Linker Histone in the Regulation of Innate Immune Gene Expression

Maja Studencka, Anne Konzer, Gael Moneron, Dirk Wenzel, Lennart Opitz, Gabriela Salinas-Riester, Cecile Bedet, Marcus Krüger, Stefan W. Hell, Jacek R. Wisniewski, Henning Schmidt, Francesca Palladino, Ekkehard Schulze, Monika Jedrusik-Bode

Mol Cell Biol. 2012 Jan; 32(2): 251–265. doi: 10.1128/MCB.05229-11

PMCID:: PMC3255762

Abstract Article PDF–3.0M

Select item 318425915.

Stable Isotope Labeling with Amino acids in Nematodes

Mark Larance, Aymeric P. Bailly, Ehsan Pourkarimi, Ronald T. Hay, Grant Buchanan, Sarah Coulthurst, Dimitris P. Xirodimas, Anton Gartner, Angus I. Lamond

Nat Methods. Author manuscript; available in PMC 2012 Feb 28.

Published in final edited form as: Nat Methods. 2011 Aug 28; 8(10): 849–851. Published online 2011 Aug 28. doi: 10.1038/nmeth.1679

PMCID:: PMC3184259

Abstract Article PDF–480K

Select item 310207716.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 269875517.

HIS-24 Linker Histone and SIR-2.1 Deacetylase Induce H3K27me3 in the Caenorhabditis elegans Germ Line

Martina Wirth, Franziska Paap, Wolfgang Fischle, Dirk Wenzel, Dmitry E. Agafonov, Timur R. Samatov, Jacek R. Wisniewski, Monika Jedrusik-Bode

Mol Cell Biol. 2009 Jul; 29(13): 3700–3709. Published online 2009 Apr 20. doi: 10.1128/MCB.00018-09

PMCID:: PMC2698755

Abstract Article PDF–1.3M

Select item 182051718.

Linker Histone HIS-24 (H1.1) Cytoplasmic Retention Promotes Germ Line Development and Influences Histone H3 Methylation in Caenorhabditis elegans

Monika A. Jedrusik, Ekkehard Schulze

Mol Cell Biol. 2007 Mar; 27(6): 2229–2239. Published online 2007 Jan 8. doi: 10.1128/MCB.01713-06

PMCID:: PMC1820517

Abstract Article PDF–1.4M

Select item 108828919.

Analysis of long-lived C. elegans daf-2 mutants using serial analysis of gene expression

Julius Halaschek-Wiener, Jaswinder S. Khattra, Sheldon McKay, Anatoli Pouzyrev, Jeff M. Stott, George S. Yang, Robert A. Holt, Steven J.M. Jones, Marco A. Marra, Angela R. Brooks-Wilson, Donald L. Riddle

Genome Res. 2005 May; 15(5): 603–615. doi: 10.1101/gr.3274805