PMC Links for GEO Profiles (Select 99454489) - PMC

Select item 108351291.

Amino acid and protein specificity of protein fatty acylation in C. elegans

Bingsen Zhang, Yan Yu, Bennett W. Fox, Yinong Liu, Venkatesh P. Thirumalaikumar, Aleksandra Skirycz, Hening Lin, Frank C. Schroeder

Proc Natl Acad Sci U S A. 2024 Jan 30; 121(5): e2307515121. Published online 2024 Jan 22. doi: 10.1073/pnas.2307515121

PMCID:: PMC10835129

Abstract Article PDF–1.4M

Select item 107216132.

On the benefits of the tryptophan metabolite 3-hydroxyanthranilic acid in Caenorhabditis elegans and mouse aging

Hope Dang, Raul Castro-Portuguez, Luis Espejo, Grant Backer, Samuel Freitas, Erica Spence, Jeremy Meyers, Karissa Shuck, Emily A. Gardea, Leah M. Chang, Jonah Balsa, Niall Thorns, Caroline Corban, Teresa Liu, Shannon Bean, Susan Sheehan, Ron Korstanje, George L. Sutphin

Nat Commun. 2023; 14: 8338. Published online 2023 Dec 14. doi: 10.1038/s41467-023-43527-1

PMCID:: PMC10721613

Abstract Article PDF–1.2M

Select item 79951763.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 62165904.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 34431215.

Delaying aging and the aging-associated decline in protein homeostasis by inhibition of tryptophan degradation

Annemieke T. van der Goot, Wentao Zhu, Rafael P. Vázquez-Manrique, Renée I. Seinstra, Katja Dettmer, Helen Michels, Francesca Farina, Jasper Krijnen, Ronald Melki, Rogier C. Buijsman, Mariana Ruiz Silva, Karen L. Thijssen, Ido P. Kema, Christian Neri, Peter J. Oefner, Ellen A. A. Nollen

Proc Natl Acad Sci U S A. 2012 Sep 11; 109(37): 14912–14917. Published online 2012 Aug 27. doi: 10.1073/pnas.1203083109

PMCID:: PMC3443121

Abstract Article PDF–879K

Select item 31020776.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 30917867.

A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding

Nicolas Lenfant, Jolanta Polanowska, Sophie Bamps, Shizue Omi, Jean-Paul Borg, Jérôme Reboul

BMC Genomics. 2010; 11: 671. Published online 2010 Nov 26. doi: 10.1186/1471-2164-11-671

PMCID:: PMC3091786

Abstract Article PDF–1.2M

Select item 30579238.

Empirically-controlled mapping of the Caenorhabditis elegans protein-protein interactome network

Nicolas Simonis, Jean-François Rual, Anne-Ruxandra Carvunis, Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie M Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amélie Dricot, Muhammed A Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin Sook Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin C Gunsalus, Michael E Cusick, David E Hill, Jan Tavernier, Frederick P Roth, Marc Vidal

Nat Methods. Author manuscript; available in PMC 2011 Mar 15.

Published in final edited form as: Nat Methods. 2009 Jan; 6(1): 47–54. doi: 10.1038/nmeth.1279

PMCID:: PMC3057923

Abstract Article PDF–3.0M

Select item 16989499.

A Map of the Interactome Network of the Metazoan C. elegans

Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal

Science. Author manuscript; available in PMC 2006 Dec 14.

Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403

PMCID:: PMC1698949

Abstract Article PDF–1.4M

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