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Select item 108351291.

Amino acid and protein specificity of protein fatty acylation in C. elegans

Bingsen Zhang, Yan Yu, Bennett W. Fox, Yinong Liu, Venkatesh P. Thirumalaikumar, Aleksandra Skirycz, Hening Lin, Frank C. Schroeder

Proc Natl Acad Sci U S A. 2024 Jan 30; 121(5): e2307515121. Published online 2024 Jan 22. doi: 10.1073/pnas.2307515121

PMCID:: PMC10835129

Abstract Article PDF–1.4M

Select item 107611212.

CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing

Doreen I. Lugano, Lindsey N. Barrett, Dale Chaput, Margaret A. Park, Sandy D. Westerheide

RNA Biol. 2024; 21(1): 1–11. Published online 2023 Dec 21. doi: 10.1080/15476286.2023.2289707

PMCID:: PMC10761121

Abstract Article PDF–2.5M

Select item 105756713.

azyx-1 is a new gene that overlaps with zyxin and affects its translation in C. elegans, impacting muscular integrity and locomotion

Bhavesh S. Parmar, Amanda Kieswetter, Ellen Geens, Elke Vandewyer, Christina Ludwig, Liesbet Temmerman

PLoS Biol. 2023 Sep; 21(9): e3002300. Published online 2023 Sep 15. doi: 10.1371/journal.pbio.3002300

PMCID:: PMC10575671

Abstract Article PDF–1.9M

Select item 105538194.

ADAR-mediated regulation of PQM-1 expression in neurons impacts gene expression throughout C. elegans and regulates survival from hypoxia

Ananya Mahapatra, Alfa Dhakal, Aika Noguchi, Pranathi Vadlamani, Heather A. Hundley

PLoS Biol. 2023 Sep; 21(9): e3002150. Published online 2023 Sep 25. doi: 10.1371/journal.pbio.3002150

PMCID:: PMC10553819

Abstract Article PDF–1.7M

Select item 105423135.

An expanded GCaMP reporter toolkit for functional imaging in Caenorhabditis elegans

Jimmy Ding, Lucinda Peng, Sihoon Moon, Hyun Jee Lee, Dhaval S Patel, Hang Lu

G3 (Bethesda) 2023 Oct; 13(10): jkad183. Published online 2023 Aug 11. doi: 10.1093/g3journal/jkad183

PMCID:: PMC10542313

Abstract Article PDF–794K

Select item 101514136.

Isolation and molecular identification of nematode surface mutants with resistance to bacterial pathogens

Delia O’Rourke, Maria J Gravato-Nobre, Dave Stroud, Emily Pritchett, Emily Barker, Rebecca L Price, Sarah A Robinson, Simon Spiro, Patricia Kuwabara, Jonathan Hodgkin

G3 (Bethesda) 2023 May; 13(5): jkad056. Published online 2023 Mar 13. doi: 10.1093/g3journal/jkad056

PMCID:: PMC10151413

Abstract Article PDF–17M

Select item 97246607.

Histidine dephosphorylation of the Gβ protein GPB‐1 promotes axon regeneration in C. elegans

Yoshiki Sakai, Hiroshi Hanafusa, Naoki Hisamoto, Kunihiro Matsumoto

EMBO Rep. 2022 Dec; 23(12): e55076. Published online 2022 Oct 24. doi: 10.15252/embr.202255076

PMCID:: PMC9724660

Abstract Article PDF–5.4M

Select item 94378488.

Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans

Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono

J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343

PMCID:: PMC9437848

Abstract Article PDF–2.0M

Select item 92839409.

A metabolic regulatory network for the Caenorhabditis elegans intestine

Sushila Bhattacharya, Brent B. Horowitz, Jingyan Zhang, Xuhang Li, Hefei Zhang, Gabrielle E. Giese, Amy D. Holdorf, Albertha J.M. Walhout

iScience. 2022 Aug 19; 25(8): 104688. Published online 2022 Jun 30. doi: 10.1016/j.isci.2022.104688

PMCID:: PMC9283940

Abstract Article PDF–4.7M

Select item 881402610.

Mitochondrial protein import determines lifespan through metabolic reprogramming and de novo serine biosynthesis

Eirini Lionaki, Ilias Gkikas, Ioanna Daskalaki, Maria-Konstantina Ioannidi, Maria I. Klapa, Nektarios Tavernarakis

Nat Commun. 2022; 13: 651. Published online 2022 Feb 3. doi: 10.1038/s41467-022-28272-1

PMCID:: PMC8814026

Abstract Article PDF–2.3M

Select item 844679311.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Abstract Article PDF–1.6M

Select item 799517612.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 713277213.

Distinct roles of two eIF4E isoforms in the germline of Caenorhabditis elegans

Hayden P. Huggins, Jacob S. Subash, Hamilton Stoffel, Melissa A. Henderson, Jenna L. Hoffman, David S. Buckner, Madhu S. Sengupta, Peter R. Boag, Myon-Hee Lee, Brett D. Keiper

J Cell Sci. 2020 Mar 15; 133(6): jcs237990. Published online 2020 Mar 30. doi: 10.1242/jcs.237990

PMCID:: PMC7132772

Abstract Article

Select item 621659014.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 360616315.

Genome-Wide Microarrray Analysis Reveals Roles for the REF-1 Family Member HLH-29 in Ferritin Synthesis and Peroxide Stress Response

Thanh K. Quach, Han Ting Chou, Kun Wang, Gaolin Zheng Milledge, Casonya M. Johnson

PLoS One. 2013; 8(3): e59719. Published online 2013 Mar 22. doi: 10.1371/journal.pone.0059719

PMCID:: PMC3606163

Abstract Article PDF–6.3M

Select item 344284216.

A UPR-independent infection-specific role for a BiP/GRP78 protein in the control of antimicrobial peptide expression in C. elegans epidermis

Carole Couillault, Patrick Fourquet, Matthieu Pophillat, Jonathan J. Ewbank

Virulence. 2012 May 1; 3(3): 299–308. doi: 10.4161/viru.20384

PMCID:: PMC3442842

Abstract Article PDF–1.2M

Select item 310207717.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Abstract Article PDF–530K

Select item 305792318.

Empirically-controlled mapping of the Caenorhabditis elegans protein-protein interactome network

Nicolas Simonis, Jean-François Rual, Anne-Ruxandra Carvunis, Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie M Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amélie Dricot, Muhammed A Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin Sook Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin C Gunsalus, Michael E Cusick, David E Hill, Jan Tavernier, Frederick P Roth, Marc Vidal

Nat Methods. Author manuscript; available in PMC 2011 Mar 15.

Published in final edited form as: Nat Methods. 2009 Jan; 6(1): 47–54. doi: 10.1038/nmeth.1279

PMCID:: PMC3057923

Abstract Article PDF–3.0M

Select item 268009919.

A germline-specific isoform of eIF4E (IFE-1) is required for efficient translation of stored mRNAs and maturation of both oocytes and sperm

Melissa A. Henderson, Elizabeth Cronland, Steve Dunkelbarger, Vince Contreras, Susan Strome, Brett D. Keiper

J Cell Sci. 2009 May 15; 122(10): 1529–1539. Published online 2009 Apr 21. doi: 10.1242/jcs.046771

PMCID:: PMC2680099

Abstract Article

Select item 189461420.

Fatty Acid Desaturation and the Regulation of Adiposity in Caenorhabditis elegans

Trisha J. Brock, John Browse, Jennifer L. Watts

Genetics. 2007 Jun; 176(2): 865–875. doi: 10.1534/genetics.107.071860

PMCID:: PMC1894614

Abstract Article PDF–1.6M

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