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Items: 20

1.
CCAR-1 works together with the U2AF large subunit UAF-1 to regulate alternative splicing
Doreen I. Lugano, Lindsey N. Barrett, Dale Chaput, Margaret A. Park, Sandy D. Westerheide
RNA Biol. 2024; 21(1): 1–11. Published online 2023 Dec 21. doi: 10.1080/15476286.2023.2289707
PMCID:
PMC10761121
AbstractArticlePDF–2.5M
2.
Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans
Murat Artan, Markus Hartl, Weiqiang Chen, Mario de Bono
J Biol Chem. 2022 Sep; 298(9): 102343. Published online 2022 Aug 3. doi: 10.1016/j.jbc.2022.102343
PMCID:
PMC9437848
AbstractArticlePDF–2.0M
3.
A modified TurboID approach identifies tissue-specific centriolar components in C. elegans
Elisabeth Holzer, Cornelia Rumpf-Kienzl, Sebastian Falk, Alexander Dammermann
PLoS Genet. 2022 Apr; 18(4): e1010150. Published online 2022 Apr 20. doi: 10.1371/journal.pgen.1010150
Correction in:
PLoS Genet. 2023 Feb; 19(2): e1010645.
PMCID:
PMC9020716
AbstractArticlePDF–2.0M
4.
Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling
Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono
J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094
Correction in:
J Biol Chem. 2022 Jun; 298(6): 102081.
PMCID:
PMC8446793
AbstractArticlePDF–1.6M
5.
Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules
Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus
eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833
PMCID:
PMC8331183
AbstractArticlePDF–8.5M
6.
EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes
Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili
Nat Methods. Author manuscript; available in PMC 2021 Mar 26.
Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4
PMCID:
PMC7995176
AbstractArticlePDF–1.0M
7.
Caenorhabditis elegans algn-2 Is Critical for Longevity Conferred by Enhanced Nonsense-Mediated mRNA Decay
Eun Ji E. Kim, Heehwa G. Son, Hae-Eun H. Park, Yoonji Jung, Sujeong Kwon, Seung-Jae V. Lee
iScience. 2020 Nov 20; 23(11): 101713. Published online 2020 Oct 20. doi: 10.1016/j.isci.2020.101713
PMCID:
PMC7662852
AbstractArticlePDF–2.0M
8.
OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes
Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye
Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307
PMCID:
PMC6216590
AbstractArticlePDF–1.4M
9.
The RNA-binding protein repertoire of Arabidopsis thaliana
Claudius Marondedze, Ludivine Thomas, Natalia L. Serrano, Kathryn S. Lilley, Chris Gehring
Sci Rep. 2016; 6: 29766. Published online 2016 Jul 11. doi: 10.1038/srep29766
PMCID:
PMC4942612
AbstractArticlePDF–1.2M
10.
The nascent polypeptide-associated complex is a key regulator of proteostasis
Janine Kirstein-Miles, Annika Scior, Elke Deuerling, Richard I Morimoto
EMBO J. 2013 May 15; 32(10): 1451–1468. Published online 2013 Apr 19. doi: 10.1038/emboj.2013.87
PMCID:
PMC3655472
AbstractArticlePDF–1.7M
11.
OrthoList: A Compendium of C. elegans Genes with Human Orthologs
Daniel D. Shaye, Iva Greenwald
PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085
Correction in:
PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.
PMCID:
PMC3102077
AbstractArticlePDF–530K
12.
A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding
Nicolas Lenfant, Jolanta Polanowska, Sophie Bamps, Shizue Omi, Jean-Paul Borg, Jérôme Reboul
BMC Genomics. 2010; 11: 671. Published online 2010 Nov 26. doi: 10.1186/1471-2164-11-671
PMCID:
PMC3091786
AbstractArticlePDF–1.2M
13.
A Genomewide RNAi Screen for Genes That Affect the Stability, Distribution and Function of P Granules in Caenorhabditis elegans
Dustin L. Updike, Susan Strome
Genetics. 2009 Dec; 183(4): 1397–1419. doi: 10.1534/genetics.109.110171
PMCID:
PMC2787428
AbstractArticlePDF–6.6M
14.
Sperm chromatin proteomics identifies evolutionarily conserved fertility factors
Diana S. Chu, Hongbin Liu, Paola Nix, Tammy F. Wu, Edward J. Ralston, John R. Yates, III, Barbara J. Meyer
Nature. Author manuscript; available in PMC 2009 Aug 25.
Published in final edited form as: Nature. 2006 Sep 7; 443(7107): 101–105. Published online 2006 Aug 30. doi: 10.1038/nature05050
PMCID:
PMC2731558
AbstractArticlePDF–1.4M
15.
SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay
Akio Yamashita, Natsuko Izumi, Isao Kashima, Tetsuo Ohnishi, Bonnie Saari, Yukiko Katsuhata, Reiko Muramatsu, Tomoko Morita, Akihiro Iwamatsu, Takahisa Hachiya, Rie Kurata, Hisashi Hirano, Philip Anderson, Shigeo Ohno
Genes Dev. 2009 May 1; 23(9): 1091–1105. doi: 10.1101/gad.1767209
PMCID:
PMC2682953
AbstractArticlePDF–1.0M
16.
Mutations in genes involved in nonsense mediated decay ameliorate the phenotype of sel-12 mutants with amber stop mutations in Caenorhabditis elegans
Alisson M Gontijo, Sylvie Aubert, Ingele Roelens, Bernard Lakowski
BMC Genet. 2009; 10: 14. Published online 2009 Mar 20. doi: 10.1186/1471-2156-10-14
PMCID:
PMC2678165
AbstractArticlePDF–1020K
17.
Caenorhabditis elegans SMG-2 Selectively Marks mRNAs Containing Premature Translation Termination Codons
Lisa Johns, Andrew Grimson, Sherry L. Kuchma, Carrie Loushin Newman, Philip Anderson
Mol Cell Biol. 2007 Aug; 27(16): 5630–5638. Published online 2007 Jun 11. doi: 10.1128/MCB.00410-07
PMCID:
PMC1952128
AbstractArticlePDF–672K
18.
A Map of the Interactome Network of the Metazoan C. elegans
Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2006 Dec 14.
Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403
PMCID:
PMC1698949
AbstractArticlePDF–1.4M
19.
SMG-1 Is a Phosphatidylinositol Kinase-Related Protein Kinase Required for Nonsense-Mediated mRNA Decay in Caenorhabditis elegans
Andrew Grimson, Sean O'Connor, Carrie Loushin Newman, Philip Anderson
Mol Cell Biol. 2004 Sep; 24(17): 7483–7490. doi: 10.1128/MCB.24.17.7483-7490.2004
PMCID:
PMC506987
AbstractArticlePDF–319K
20.
Unproductively spliced ribosomal protein mRNAs are natural targets of mRNA surveillance in C. elegans
Quinn M. Mitrovich, Philip Anderson
Genes Dev. 2000 Sep 1; 14(17): 2173–2184. doi: 10.1101/gad.819900
PMCID:
PMC316897
AbstractArticlePDF–2.7M

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