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Select item 106176261.

SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans

Valerie J. Robert, Matthieu Caron, Loic Gely, Annie Adrait, Victoria Pakulska, Yohann Couté, Manon Chevalier, Christian G. Riedel, Cecile Bedet, Francesca Palladino

Development. 2023 Nov 1; 150(21): dev201755. Published online 2023 Oct 17. doi: 10.1242/dev.201755

PMCID:: PMC10617626

Abstract Article

Select item 96488482.

Exon-dependent transcriptional adaptation by exon-junction complex proteins Y14/RNP-4 and MAGOH/MAG-1 in Caenorhabditis elegans

Jesus Fernandez-Abascal, Lei Wang, Bianca Graziano, Christina K. Johnson, Laura Bianchi

PLoS Genet. 2022 Oct; 18(10): e1010488. Published online 2022 Oct 31. doi: 10.1371/journal.pgen.1010488

PMCID:: PMC9648848

Abstract Article PDF–2.5M

Select item 93719103.

The silencing of ets-4 mRNA relies on the functional cooperation between REGE-1/Regnase-1 and RLE-1/Roquin-1

Daria Sobańska, Alicja A Komur, Agnieszka Chabowska-Kita, Julita Gumna, Pooja Kumari, Katarzyna Pachulska-Wieczorek, Rafal Ciosk

Nucleic Acids Res. 2022 Aug 12; 50(14): 8226–8239. Published online 2022 Jul 12. doi: 10.1093/nar/gkac609

PMCID:: PMC9371910

Abstract Article PDF–4.7M

Select item 92075084.

HLH-1 Modulates Muscle Proteostasis During Caenorhabditis elegans Larval Development

Khairun Nisaa, Anat Ben-Zvi

Front Cell Dev Biol. 2022; 10: 920569. Published online 2022 Jun 6. doi: 10.3389/fcell.2022.920569

PMCID:: PMC9207508

Abstract Article PDF–2.5M

Select item 90650845.

Functional identification of microRNA-centered complexes in C. elegans

Shilpa Hebbar, Ganesh Panzade, Ajay A. Vashisht, James A. Wohlschlegel, Isana Veksler-Lublinsky, Anna Y. Zinovyeva

Sci Rep. 2022; 12: 7133. Published online 2022 May 3. doi: 10.1038/s41598-022-10771-2

PMCID:: PMC9065084

Abstract Article PDF–2.2M

Select item 83311836.

Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules

Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus

eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833

PMCID:: PMC8331183

Abstract Article PDF–8.5M

Select item 79951767.

EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes

Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili

Nat Methods. Author manuscript; available in PMC 2021 Mar 26.

Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4

PMCID:: PMC7995176

Abstract Article PDF–1.0M

Select item 78086048.

CLK-2/TEL2 is a conserved component of the nonsense-mediated mRNA decay pathway

Yanwu Guo, Cristina Tocchini, Rafal Ciosk

PLoS One. 2021; 16(1): e0244505. Published online 2021 Jan 14. doi: 10.1371/journal.pone.0244505

PMCID:: PMC7808604

Abstract Article PDF–1.9M

Select item 76628529.

Caenorhabditis elegans algn-2 Is Critical for Longevity Conferred by Enhanced Nonsense-Mediated mRNA Decay

Eun Ji E. Kim, Heehwa G. Son, Hae-Eun H. Park, Yoonji Jung, Sujeong Kwon, Seung-Jae V. Lee

iScience. 2020 Nov 20; 23(11): 101713. Published online 2020 Oct 20. doi: 10.1016/j.isci.2020.101713

PMCID:: PMC7662852

Abstract Article PDF–2.0M

Select item 682736810.

Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules

Elisabeth A. Marnik, J. Heath Fuqua, Catherine S. Sharp, Jesse D. Rochester, Emily L. Xu, Sarah E. Holbrook, Dustin L. Updike

Genetics. 2019 Nov; 213(3): 923–939. Published online 2019 Sep 10. doi: 10.1534/genetics.119.302670

PMCID:: PMC6827368

Abstract Article PDF–4.0M

Select item 621659011.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Abstract Article PDF–1.4M

Select item 613707612.

FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells

Ena Kolundzic, Andreas Ofenbauer, Selman I. Bulut, Bora Uyar, Gülkiz Baytek, Anne Sommermeier, Stefanie Seelk, Mei He, Antje Hirsekorn, Dubravka Vucicevic, Altuna Akalin, Sebastian Diecke, Scott A. Lacadie, Baris Tursun

Dev Cell. 2018 Sep 10; 46(5): 611–626.e12. doi: 10.1016/j.devcel.2018.07.006

PMCID:: PMC6137076

Abstract Article

Select item 576534813.

The Substrates of Nonsense-Mediated mRNA Decay in Caenorhabditis elegans

Virginia S. Muir, Audrey P. Gasch, Philip Anderson

G3 (Bethesda) 2018 Jan; 8(1): 195–205. Published online 2017 Nov 9. doi: 10.1534/g3.117.300254

PMCID:: PMC5765348

Abstract Article PDF–1.9M

Select item 556351114.

Differential alternative splicing coupled to nonsense-mediated decay of mRNA ensures dietary restriction-induced longevity

Syed Shamsh Tabrez, Ravi Datta Sharma, Vaibhav Jain, Atif Ahmed Siddiqui, Arnab Mukhopadhyay

Nat Commun. 2017; 8: 306. Published online 2017 Aug 21. doi: 10.1038/s41467-017-00370-5

PMCID:: PMC5563511

Abstract Article PDF–1.2M

Select item 520126915.

A Differentiation Transcription Factor Establishes Muscle-Specific Proteostasis in Caenorhabditis elegans

Yael Bar-Lavan, Netta Shemesh, Shiran Dror, Rivka Ofir, Esti Yeger-Lotem, Anat Ben-Zvi

PLoS Genet. 2016 Dec; 12(12): e1006531. Published online 2016 Dec 30. doi: 10.1371/journal.pgen.1006531

PMCID:: PMC5201269

Abstract Article PDF–2.6M

Select item 494261216.

The RNA-binding protein repertoire of Arabidopsis thaliana

Claudius Marondedze, Ludivine Thomas, Natalia L. Serrano, Kathryn S. Lilley, Chris Gehring

Sci Rep. 2016; 6: 29766. Published online 2016 Jul 11. doi: 10.1038/srep29766

PMCID:: PMC4942612

Abstract Article PDF–1.2M

Select item 488967017.

N-Ethyl-N-Nitrosourea (ENU) Mutagenesis Reveals an Intronic Residue Critical for Caenorhabditis elegans 3′ Splice Site Function in Vivo

Omar A. Itani, Stephane Flibotte, Kathleen J. Dumas, Chunfang Guo, Thomas Blumenthal, Patrick J. Hu

G3 (Bethesda) 2016 Jun; 6(6): 1751–1756. Published online 2016 Apr 8. doi: 10.1534/g3.116.028662

PMCID:: PMC4889670

Abstract Article PDF–972K

Select item 458683818.

Caenorhabditis elegans ALG-1 antimorphic mutations uncover functions for Argonaute in microRNA guide strand selection and passenger strand disposal

Anna Y. Zinovyeva, Isana Veksler-Lublinsky, Ajay A. Vashisht, James A. Wohlschlegel, Victor R. Ambros

Proc Natl Acad Sci U S A. 2015 Sep 22; 112(38): E5271–E5280. Published online 2015 Sep 8. doi: 10.1073/pnas.1506576112

PMCID:: PMC4586838

Abstract Article PDF–1.1M

Select item 453423419.

RNA helicase HEL-1 promotes longevity by specifically activating DAF-16/FOXO transcription factor signaling in Caenorhabditis elegans

Mihwa Seo, Keunhee Seo, Wooseon Hwang, Hee Jung Koo, Jeong-Hoon Hahm, Jae-Seong Yang, Seong Kyu Han, Daehee Hwang, Sanguk Kim, Sung Key Jang, Yoontae Lee, Hong Gil Nam, Seung-Jae V. Lee

Proc Natl Acad Sci U S A. 2015 Aug 4; 112(31): E4246–E4255. Published online 2015 Jul 20. doi: 10.1073/pnas.1505451112