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Items: 1 to 20 of 94

1.
Intra- and inter-molecular regulation by intrinsically-disordered regions governs PUF protein RNA binding
Chen Qiu, Zihan Zhang, Robert N. Wine, Zachary T. Campbell, Jun Zhang, Traci M. Tanaka Hall
Nat Commun. 2023; 14: 7323. Published online 2023 Nov 13. doi: 10.1038/s41467-023-43098-1
PMCID:
PMC10641069
AbstractArticlePDF–1.8M
2.
PUF-8, a C. elegans ortholog of the RNA-binding proteins PUM1 and PUM2, is required for robustness of the cell death fate
Jimei Xu, Yanwen Jiang, Ryan Sherrard, Kyoko Ikegami, Barbara Conradt
Development. 2023 Oct 1; 150(19): dev201167. Published online 2023 Oct 6. doi: 10.1242/dev.201167
PMCID:
PMC10565243
AbstractArticle
3.
The in vivo functional significance of PUF hub partnerships in C. elegans germline stem cells
Ahlan S. Ferdous, Stephany J. Costa Dos Santos, Charlotte R. Kanzler, Heaji Shin, Brian H. Carrick, Sarah L. Crittenden, Marvin Wickens, Judith Kimble
Development. 2023 May 1; 150(9): dev201705. Published online 2023 May 9. doi: 10.1242/dev.201705
PMCID:
PMC10259659
AbstractArticle
4.
Bipartite interaction sites differentially modulate RNA-binding affinity of a protein complex essential for germline stem cell self-renewal
Chen Qiu, Robert N Wine, Zachary T Campbell, Traci M Tanaka Hall
Nucleic Acids Res. 2022 Jan 11; 50(1): 536–548. Published online 2021 Dec 15. doi: 10.1093/nar/gkab1220
PMCID:
PMC8754657
AbstractArticlePDF–5.7M
5.
Structural recognition of the mRNA 3′ UTR by PUF-8 restricts the lifespan of C. elegans
Zheng Xu, Jie Zhao, Minjie Hong, Chenming Zeng, Shouhong Guang, Yunyu Shi
Nucleic Acids Res. 2021 Sep 27; 49(17): 10082–10097. Published online 2021 Sep 3. doi: 10.1093/nar/gkab754
PMCID:
PMC8464079
AbstractArticlePDF–7.4M
6.
Genes in human obesity loci are causal obesity genes in C. elegans
Wenfan Ke, Jordan N. Reed, Chenyu Yang, Noel Higgason, Leila Rayyan, Carolina Wählby, Anne E. Carpenter, Mete Civelek, Eyleen J. O’Rourke
PLoS Genet. 2021 Sep; 17(9): e1009736. Published online 2021 Sep 7. doi: 10.1371/journal.pgen.1009736
PMCID:
PMC8462697
AbstractArticlePDF–4.2M
7.
Sperm fate is promoted by the mir-44 microRNA family in the Caenorhabditis elegans hermaphrodite germline
Katherine A Maniates, Benjamin S Olson, Allison L Abbott
Genetics. 2021 Jan; 217(1): iyaa006. Published online 2020 Nov 20. doi: 10.1093/genetics/iyaa006
PMCID:
PMC8045739
AbstractArticlePDF–891K
8.
EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes
Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili
Nat Methods. Author manuscript; available in PMC 2021 Mar 26.
Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4
PMCID:
PMC7995176
AbstractArticlePDF–1.0M
9.
The conserved molting/circadian rhythm regulator NHR-23/NR1F1 serves as an essential co-regulator of C. elegans spermatogenesis
James Matthew Ragle, Abigail L. Aita, Kayleigh N. Morrison, Raquel Martinez-Mendez, Hannah N. Saeger, Guinevere A. Ashley, Londen C. Johnson, Katherine A. Schubert, Diane C. Shakes, Jordan D. Ward
Development. 2020 Nov 15; 147(22): dev193862. Published online 2020 Nov 27. doi: 10.1242/dev.193862
PMCID:
PMC7710015
AbstractArticle
10.
Antagonistic control of Caenorhabditis elegans germline stem cell proliferation and differentiation by PUF proteins FBF-1 and FBF-2
Xiaobo Wang, Mary Ellenbecker, Benjamin Hickey, Nicholas J Day, Emily Osterli, Mikaya Terzo, Ekaterina Voronina
eLife. 2020; 9: e52788. Published online 2020 Aug 17. doi: 10.7554/eLife.52788
PMCID:
PMC7467723
AbstractArticlePDF–6.2M
11.
GLP-1 Notch—LAG-1 CSL control of the germline stem cell fate is mediated by transcriptional targets lst-1 and sygl-1
Jian Chen, Ariz Mohammad, Nanette Pazdernik, Huiyan Huang, Beth Bowman, Eric Tycksen, Tim Schedl
PLoS Genet. 2020 Mar; 16(3): e1008650. Published online 2020 Mar 20. doi: 10.1371/journal.pgen.1008650
PMCID:
PMC7153901
AbstractArticlePDF–3.2M
12.
Distinct roles of two eIF4E isoforms in the germline of Caenorhabditis elegans
Hayden P. Huggins, Jacob S. Subash, Hamilton Stoffel, Melissa A. Henderson, Jenna L. Hoffman, David S. Buckner, Madhu S. Sengupta, Peter R. Boag, Myon-Hee Lee, Brett D. Keiper
J Cell Sci. 2020 Mar 15; 133(6): jcs237990. Published online 2020 Mar 30. doi: 10.1242/jcs.237990
PMCID:
PMC7132772
AbstractArticle
13.
Diverse Roles of PUF Proteins in Germline Stem and Progenitor Cell Development in C. elegans
Xiaobo Wang, Ekaterina Voronina
Front Cell Dev Biol. 2020; 8: 29. Published online 2020 Feb 6. doi: 10.3389/fcell.2020.00029
PMCID:
PMC7015873
AbstractArticlePDF–1.3M
14.
A PUF Hub Drives Self-Renewal in Caenorhabditis elegans Germline Stem Cells
Kimberly A. Haupt, Kimberley T. Law, Amy L. Enright, Charlotte R. Kanzler, Heaji Shin, Marvin Wickens, Judith Kimble
Genetics. 2020 Jan; 214(1): 147–161. Published online 2019 Nov 18. doi: 10.1534/genetics.119.302772
PMCID:
PMC6944405
AbstractArticlePDF–2.4M
15.
Stage-specific combinations of opposing poly(A) modifying enzymes guide gene expression during early oogenesis
Marco Nousch, Assa Yeroslaviz, Christian R Eckmann
Nucleic Acids Res. 2019 Nov 18; 47(20): 10881–10893. Published online 2019 Sep 12. doi: 10.1093/nar/gkz787
PMCID:
PMC6845980
AbstractArticlePDF–4.7M
16.
The molecular basis of LST-1 self-renewal activity and its control of stem cell pool size
Kimberly A. Haupt, Amy L. Enright, Ahlan S. Ferdous, Aaron M. Kershner, Heaji Shin, Marvin Wickens, Judith Kimble
Development. 2019 Oct 15; 146(20): dev181644. Published online 2019 Oct 17. doi: 10.1242/dev.181644
PMCID:
PMC6826033
AbstractArticle
17.
Identification of proteins and miRNAs that specifically bind an mRNA in vivo
Kathrin Theil, Koshi Imami, Nikolaus Rajewsky
Nat Commun. 2019; 10: 4205. Published online 2019 Sep 16. doi: 10.1038/s41467-019-12050-7
PMCID:
PMC6746756
AbstractArticlePDF–6.8M
18.
A crystal structure of a collaborative RNA regulatory complex reveals mechanisms to refine target specificity
Chen Qiu, Vandita D Bhat, Sanjana Rajeev, Chi Zhang, Alexa E Lasley, Robert N Wine, Zachary T Campbell, Traci M Tanaka Hall
eLife. 2019; 8: e48968. Published online 2019 Aug 9. doi: 10.7554/eLife.48968
PMCID:
PMC6697444
AbstractArticlePDF–1.4M
19.
Engineering a conserved RNA regulatory protein repurposes its biological function in vivo
Vandita D Bhat, Kathleen L McCann, Yeming Wang, Dallas R Fonseca, Tarjani Shukla, Jacqueline C Alexander, Chen Qiu, Marv Wickens, Te-Wen Lo, Traci M Tanaka Hall, Zachary T Campbell
eLife. 2019; 8: e43788. Published online 2019 Jan 17. doi: 10.7554/eLife.43788
PMCID:
PMC6351103
AbstractArticlePDF–2.9M
20.
Toward Identifying Subnetworks from FBF Binding Landscapes in Caenorhabditis Spermatogenic or Oogenic Germlines
Douglas F. Porter, Aman Prasad, Brian H. Carrick, Peggy Kroll-Connor, Marvin Wickens, Judith Kimble
G3 (Bethesda) 2019 Jan; 9(1): 153–165. Published online 2018 Nov 20. doi: 10.1534/g3.118.200300
PMCID:
PMC6325917
AbstractArticlePDF–1.7M

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