PMC Links for Nucleotide (Select 116062158) - PMC

Select item 59114591.

Two Family B DNA Polymerases From Aeropyrum pernix, Based on Revised Translational Frames

Katsuya Daimon, Sonoko Ishino, Namiko Imai, Sachiyo Nagumo, Takeshi Yamagami, Hiroaki Matsukawa, Yoshizumi Ishino

Front Mol Biosci. 2018; 5: 37. Published online 2018 Apr 16. doi: 10.3389/fmolb.2018.00037

PMCID:: PMC5911459

Select item 57974282.

Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome

Sophie S. Abby, Michael Melcher, Melina Kerou, Mart Krupovic, Michaela Stieglmeier, Claudia Rossel, Kevin Pfeifer, Christa Schleper

Front Microbiol. 2018; 9: 28. Published online 2018 Jan 26. doi: 10.3389/fmicb.2018.00028

PMCID:: PMC5797428

Abstract Article PDF–4.2M

Select item 51725473.

A Comprehensive Software Suite for the Analysis of cDNAs

Kazuharu Arakawa, Haruo Suzuki, Kosuke Fujishima, Kenji Fujimoto, Sho Ueda, Motomu Matsui, Masaru Tomita

Genomics Proteomics Bioinformatics. 2005; 3(3): 179–188. Published online 2016 Nov 28. doi: 10.1016/S1672-0229(05)03023-8

PMCID:: PMC5172547

Abstract Article PDF–541K

Select item 41687024.

Assembly-free genome comparison based on next-generation sequencing reads and variable length patterns

Matteo Comin, Michele Schimd

BMC Bioinformatics. 2014; 15(Suppl 9): S1. Published online 2014 Sep 10. doi: 10.1186/1471-2105-15-S9-S1

PMCID:: PMC4168702

Abstract Article PDF–676K

Select item 40199375.

Phylogenomic reconstruction of archaeal fatty acid metabolism

Daria V. Dibrova, Michael Y. Galperin, Armen Y. Mulkidjanian

Environ Microbiol. Author manuscript; available in PMC 2015 Apr 1.

Published in final edited form as: Environ Microbiol. 2014 Apr; 16(4): 907–918. doi: 10.1111/1462-2920.12359

PMCID:: PMC4019937

Abstract Article PDF–664K

Select item 33102976.

On the Existence of Wavelet Symmetries in Archaea DNA

Carlo Cattani

Comput Math Methods Med. 2012; 2012: 673934. Published online 2011 Nov 28. doi: 10.1155/2012/673934

PMCID:: PMC3310297

Abstract Article PDF–9.3M

Select item 31563977.

Complete genome sequence of the hyperthermophilic chemolithoautotroph Pyrolobus fumarii type strain (1A^T)

Iain Anderson, Markus Göker, Matt Nolan, Susan Lucas, Nancy Hammon, Shweta Deshpande, Jan-Fang Cheng, Roxanne Tapia, Cliff Han, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Konstantinos Liolios, Natalia Ivanova, Ioanna Pagani, Konstantinos Mavromatis, Galina Ovchinikova, Amrita Pati, Amy Chen, Krishna Palaniappan, Miriam Land, Loren Hauser, Evelyne-Marie Brambilla, Harald Huber, Montri Yasawong, Manfred Rohde, Stefan Spring, Birte Abt, Johannes Sikorski, Reinhard Wirth, John C. Detter, Tanja Woyke, James Bristow, Jonathan A. Eisen, Victor Markowitz, Philip Hugenholtz, Nikos C. Kyrpides, Hans-Peter Klenk, Alla Lapidus

Stand Genomic Sci. 2011 Jul 1; 4(3): 381–392. Published online 2011 Jul 1. doi: 10.4056/sigs.2014648

PMCID:: PMC3156397

Abstract Article PDF–2.6M

Select item 27014938.

Fine-structured multi-scaling long-range correlations in completely sequenced genomes—features, origin, and classification

Tobias A. Knoch, Markus Göker, Rudolf Lohner, Anis Abuseiris, Frank G. Grosveld

Eur Biophys J. 2009 Jul; 38(6): 757–779. Published online 2009 Jun 17. doi: 10.1007/s00249-009-0489-y

PMCID:: PMC2701493

Abstract Article PDF–1.5M

Select item 26855859.

A putative viral defence mechanism in archaeal cells

Reidun Lillestøl, Peter Redder, Roger A. Garrett, Kim Brügger

Archaea. 2006 Aug; 2(1): 59–72. Published online 2006 Jul 10. doi: 10.1155/2006/542818

PMCID:: PMC2685585

Abstract Article PDF–1.2M

Select item 223790010.

Sequence Evidence in the Archaeal Genomes that tRNAs Emerged Through the Combination of Ancestral Genes as 5′ and 3′ tRNA Halves

Kosuke Fujishima, Junichi Sugahara, Masaru Tomita, Akio Kanai

PLoS One. 2008; 3(2): e1622. Published online 2008 Feb 20. doi: 10.1371/journal.pone.0001622

PMCID:: PMC2237900

Abstract Article PDF–541K

Select item 222261611.

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea

Kira S Makarova, Alexander V Sorokin, Pavel S Novichkov, Yuri I Wolf, Eugene V Koonin

Biol Direct. 2007; 2: 33. Published online 2007 Nov 27. doi: 10.1186/1745-6150-2-33

PMCID:: PMC2222616

Abstract Article PDF–593K

Select item 147564312.

Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation

Christian V Forst, Christoph Flamm, Ivo L Hofacker, Peter F Stadler

BMC Bioinformatics. 2006; 7: 67. Published online 2006 Feb 14. doi: 10.1186/1471-2105-7-67

PMCID:: PMC1475643

Abstract Article PDF–346K

Select item 124221413.

A computational method to predict genetically encoded rare amino acids in proteins

Barnali N Chaudhuri, Todd O Yeates

Genome Biol. 2005; 6(9): R79. Published online 2005 Aug 31. doi: 10.1186/gb-2005-6-9-r79

PMCID:: PMC1242214

Abstract Article PDF–1.0M

Select item 116025814.

MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes

Stéphane Cruveiller, Jérôme Le Saux, David Vallenet, Aurélie Lajus, Stéphanie Bocs, Claudine Médigue

Nucleic Acids Res. 2005 Jul 1; 33(Web Server issue): W471–W479. Published online 2005 Jun 27. doi: 10.1093/nar/gki498

PMCID:: PMC1160258

Abstract Article PDF–375K

Select item 55594215.

Gene fusions and gene duplications: relevance to genomic annotation and functional analysis

Margrethe H Serres, Monica Riley

BMC Genomics. 2005; 6: 33. Published online 2005 Mar 9. doi: 10.1186/1471-2164-6-33

PMCID:: PMC555942

Abstract Article PDF–374K

Select item 19361516.

The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments

Víctor González, Patricia Bustos, Miguel A Ramírez-Romero, Arturo Medrano-Soto, Heladia Salgado, Ismael Hernández-González, Juan Carlos Hernández-Celis, Verónica Quintero, Gabriel Moreno-Hagelsieb, Lourdes Girard, Oscar Rodríguez, Margarita Flores, Miguel A Cevallos, Julio Collado-Vides, David Romero, Guillermo Dávila

Genome Biol. 2003; 4(6): R36. Published online 2003 May 13. doi: 10.1186/gb-2003-4-6-r36

PMCID:: PMC193615

Abstract Article PDF–521K

Select item 13484517.

New Class of IMP Cyclohydrolases in Methanococcus jannaschii

Marion Graupner, Huimin Xu, Robert H. White

J Bacteriol. 2002 Mar; 184(5): 1471–1473. doi: 10.1128/JB.184.5.1471-1473.2002

PMCID:: PMC134845

Abstract Article PDF–59K

Select item 9909818.

The EMBL Nucleotide Sequence Database

Guenter Stoesser, Wendy Baker, Alexandra van den Broek, Evelyn Camon, Maria Garcia-Pastor, Carola Kanz, Tamara Kulikova, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Nicole Redaschi, Peter Stoehr, Mary Ann Tuli, Katerina Tzouvara, Robert Vaughan

Nucleic Acids Res. 2002 Jan 1; 30(1): 21–26. doi: 10.1093/nar/30.1.21

PMCID:: PMC99098

Abstract Article PDF–102K

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