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Select item 65342951.

The concordance of the limiting antigen and the Bio-Rad avidity assays in persons from Estonia infected mainly with HIV-1 CRF06_cpx

Kristi Huik, Pilleriin Soodla, Merit Pauskar, S. Michele Owen, Wei Luo, Gary Murphy, Ene-Ly Jõgeda, Eveli Kallas, Heli Rajasaar, Radko Avi, Silvina Masciotra, Irja Lutsar, for the CASCADE Collaboration in the EuroCoord

PLoS One. 2019; 14(5): e0217048. Published online 2019 May 24. doi: 10.1371/journal.pone.0217048

PMCID:: PMC6534295

Abstract Article PDF–1.3M

Select item 62230332.

Characterization of minority HIV-1 drug resistant variants in the United Kingdom following the verification of a deep sequencing-based HIV-1 genotyping and tropism assay

Nicholas Silver, Mary Paynter, Georgina McAllister, Maureen Atchley, Christine Sayir, John Short, Dane Winner, David J. Alouani, Freddie H. Sharkey, Kicki Bergefall, Kate Templeton, David Carrington, Miguel E. Quiñones-Mateu

AIDS Res Ther. 2018; 15: 18. Published online 2018 Nov 8. doi: 10.1186/s12981-018-0206-y

PMCID:: PMC6223033

Abstract Article PDF–2.9M

Select item 55861563.

The Indonesian Variants of CRF33_01B: Near-Full Length Sequence Analysis

Ivo N. SahBandar, Kiyomi Takahashi, Kazushi Motomura, Zubairi Djoerban, Iman Firmansyah, Katsuhiko Kitamura, Hironori Sato, Herdiman T. Pohan, Shigehiro Sato

AIDS Res Hum Retroviruses. 2011 Jan; 27(1): 97–102. Published online 2011 Jan 1. doi: 10.1089/aid.2010.0163

PMCID:: PMC5586156

Abstract Article PDF–589K

Select item 52679674.

Effect of HIV-1 Subtype C integrase mutations implied using molecular modeling and docking data

Jaiprasath Sachithanandham, Karnati Konda Reddy, King Solomon, Shoba David, Sanjeev Kumar Singh, Veena Vadhini Ramalingam, Susanne Alexander Pulimood, Ooriyapadickal Cherian Abraham, Pricilla Rupali, Gopalan Sridharan, Rajesh Kannangai

Bioinformation. 2016; 12(3): 221–230. Published online 2016 Jun 15. doi: 10.6026/97320630012221

PMCID:: PMC5267967

Abstract Article PDF–8.5M

Select item 48904715.

Short-term treatment outcomes in human immunodeficiency virus type-1 and hepatitis B virus co-infections

Kwamena William Coleman Sagoe, Kwabena Obeng Duedu, Francesca Ziga, Afrakoma Adjoa Agyei, Theophilus Korku Adiku, Margaret Lartey, Julius Abraham Addo Mingle, Max Arens

Ann Clin Microbiol Antimicrob. 2016; 15: 38. Published online 2016 Jun 2. doi: 10.1186/s12941-016-0152-2

PMCID:: PMC4890471

Abstract Article PDF–809K

Select item 45435846.

The Number and Complexity of Pure and Recombinant HIV-1 Strains Observed within Incident Infections during the HIV and Malaria Cohort Study Conducted in Kericho, Kenya, from 2003 to 2006

Erik Billings, Eric Sanders-Buell, Meera Bose, Andrea Bradfield, Esther Lei, Gustavo H. Kijak, Miguel A. Arroyo, Rukia M. Kibaya, Paul T. Scott, Monique K. Wasunna, Frederick K. Sawe, Douglas N. Shaffer, Deborah L. Birx, Francine E. McCutchan, Nelson L. Michael, Merlin L. Robb, Jerome H. Kim, Sodsai Tovanabutra

PLoS One. 2015; 10(8): e0135124. Published online 2015 Aug 19. doi: 10.1371/journal.pone.0135124

PMCID:: PMC4543584

Abstract Article PDF–3.3M

Select item 43937437.

A uniquely prevalent nonnucleoside reverse transcriptase inhibitor resistance mutation in Russian subtype A HIV-1 viruses

Anna N. Kolomeets, Vici Varghese, Philippe Lemey, Marina R. Bobkova, Robert W. Shafer

AIDS. Author manuscript; available in PMC 2015 Apr 11.

Published in final edited form as: AIDS. 2014 Nov 13; 28(17): F1–F8. doi: 10.1097/QAD.0000000000000485

PMCID:: PMC4393743

Abstract Article PDF–708K

Select item 41548678.

Subtype Classification of Iranian HIV-1 Sequences Registered in the HIV Databases, 2006-2013

Kazem Baesi, Samaneh Moallemi, Molood Farrokhi, Seyed Ahmad Seyed Alinaghi, Hong–Ha M. Truong

PLoS One. 2014; 9(9): e105098. Published online 2014 Sep 4. doi: 10.1371/journal.pone.0105098

PMCID:: PMC4154867

Abstract Article PDF–304K

Select item 39389479.

Short Communication: Molecular Epidemiology of HIV Type 1 Infection in Northern Greece (2009–2010): Evidence of a Transmission Cluster of HIV Type 1 Subtype A1 Drug-Resistant Strains Among Men Who Have Sex with Men

Zoi-Anna Antoniadou, Ioanna Kousiappa, Lemonia Skoura, Dimitris Pilalas, Simeon Metallidis, Pavlos Nicolaidis, Nicolaos Malisiovas, Leondios G. Kostrikis

AIDS Res Hum Retroviruses. 2014 Mar 1; 30(3): 225–232. doi: 10.1089/aid.2013.0166

PMCID:: PMC3938947

Abstract Article PDF–198K

Select item 393892210.

Transmitted Drug Resistance Is Still Low in Newly Diagnosed Human Immunodeficiency Virus Type 1 CRF06_cpx-Infected Patients in Estonia in 2010

Radko Avi, Kristi Huik, Merit Pauskar, Valentina Ustina, Tõnis Karki, Eveli Kallas, Ene-Ly Jõgeda, Tõnu Krispin, Irja Lutsar

AIDS Res Hum Retroviruses. 2014 Mar 1; 30(3): 278–283. doi: 10.1089/aid.2012.0357

PMCID:: PMC3938922

Abstract Article PDF–113K

Select item 327592411.

HIV Type 1 in a Rural Coastal Town in Kenya Shows Multiple Introductions with Many Subtypes and Much Recombination

Stéphane Hué, Amin S. Hassan, Helen Nabwera, Eduard J. Sanders, Deenan Pillay, James A. Berkley, Patricia A. Cane

AIDS Res Hum Retroviruses. 2012 Feb; 28(2): 220–224. doi: 10.1089/aid.2011.0048

PMCID:: PMC3275924

Abstract Article PDF–535K

Select item 320475712.

Novel HIV-1 Recombinant Forms in Antenatal Cohort, Montreal, Quebec, Canada

Mathieu Quesnel-Vallières, Iman Kouzayha, Evelyne Tran, Issatou Barry, Charlène Lasgi, Natacha Merindol, Vanessa Monteil, Doris G. Ransy, Marc Boucher, Normand Lapointe, Hugo Soudeyns

Emerg Infect Dis. 2011 Feb; 17(2): 271–274. doi: 10.3201/eid1702.100629

PMCID:: PMC3204757

Abstract Article PDF–519K

Select item 298138013.

Identification and Characterization of CRF02_AG, CRF06_cpx, and CRF09_cpx Recombinant Subtypes in Mali, West Africa

Hiromi Imamichi, Ousmane Koita, Djeneba Dabitao, Sounkalo Dao, Mahamadou Ibrah, Dramane Sogoba, Robin L. Dewar, Steve C. Berg, Min-Kang Jiang, Mark Parta, Janice A. Washington, Michael A. Polis, H. Clifford Lane, Anatole Tounkara

AIDS Res Hum Retroviruses. 2009 Jan; 25(1): 45–55. doi: 10.1089/aid.2008.0111

PMCID:: PMC2981380

Abstract Article PDF–304K

Select item 294114914.

HIV Subtype D Is Associated with Dementia, Compared with Subtype A, in Immunosuppressed Individuals at Risk of Cognitive Impairment in Kampala, Uganda

Ned Sacktor, Noeline Nakasujja, Richard L. Skolasky, Mona Rezapour, Kevin Robertson, Seggane Musisi, Elly Katabira, Allan Ronald, David B. Clifford, Oliver Laeyendecker, Thomas C. Quinn

Clin Infect Dis. Author manuscript; available in PMC 2010 Sep 17.

Published in final edited form as: Clin Infect Dis. 2009 Sep 1; 49(5): 780–786. doi: 10.1086/605284

PMCID:: PMC2941149

Abstract Article PDF–180K

Select item 271629915.

Discovery of novel targets for multi-epitope vaccines: Screening of HIV-1 genomes using association rule mining

Sinu Paul, Helen Piontkivska

Retrovirology. 2009; 6: 62. Published online 2009 Jul 6. doi: 10.1186/1742-4690-6-62

PMCID:: PMC2716299

Abstract Article PDF–996K

Select item 266666016.

Extensive purifying selection acting on synonymous sites in HIV-1 Group M sequences

Nobubelo K Ngandu, Konrad Scheffler, Penny Moore, Zenda Woodman, Darren Martin, Cathal Seoighe

Virol J. 2008; 5: 160. Published online 2008 Dec 23. doi: 10.1186/1743-422X-5-160

PMCID:: PMC2666660

Abstract Article PDF–920K

Select item 263094117.

Conserved positive selection signals in gp41 across multiple subtypes and difference in selection signals detectable in gp41 sequences sampled during acute and chronic HIV-1 subtype C infection

Gama P Bandawe, Darren P Martin, Florette Treurnicht, Koleka Mlisana, Salim S Abdool Karim, Carolyn Williamson, The CAPRISA 002 Acute Infection Study Team

Virol J. 2008; 5: 141. Published online 2008 Nov 24. doi: 10.1186/1743-422X-5-141

PMCID:: PMC2630941

Abstract Article PDF–522K

Select item 229274318.

Exceptional molecular and coreceptor-requirement properties of molecular clones isolated from an Human Immunodeficiency Virus Type-1 subtype C infection

Prasanta K Dash, Nagadenahalli B Siddappa, Asokan Mangaiarkarasi, Aruna V Mahendarkar, Padmanabhan Roshan, Krishnamurthy Kumar Anand, Anita Mahadevan, Parthasarathy Satishchandra, Susarla K Shankar, Vinayaka R Prasad, Udaykumar Ranga

Retrovirology. 2008; 5: 25. Published online 2008 Mar 7. doi: 10.1186/1742-4690-5-25

Expression of Concern in:: Retrovirology. 2024; 21: 19.

PMCID:: PMC2292743

Abstract Article PDF–1.3M

Select item 163525719.

Twin gradients in APOBEC3 edited HIV-1 DNA reflect the dynamics of lentiviral replication

Rodolphe Suspène, Christophe Rusniok, Jean-Pierre Vartanian, Simon Wain-Hobson

Nucleic Acids Res. 2006 Oct; 34(17): 4677–4684. Published online 2006 Sep 8. doi: 10.1093/nar/gkl555

PMCID:: PMC1635257

Abstract Article PDF–265K

Select item 54411420.

Evidence for Heterogeneous Selective Pressures in the Evolution of the env Gene in Different Human Immunodeficiency Virus Type 1 Subtypes

Simon A. A. Travers, Mary J. O'Connell, Grace P. McCormack, James O. McInerney

J Virol. 2005 Feb; 79(3): 1836–1841. doi: 10.1128/JVI.79.3.1836-1841.2005

PMCID:: PMC544114

Abstract Article PDF–181K

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