PMC Links for Nucleotide (Select 157781210) - PMC

Select item 65493701.

TAR-VIR: a pipeline for TARgeted VIRal strain reconstruction from metagenomic data

Jiao Chen, Jiating Huang, Yanni Sun

BMC Bioinformatics. 2019; 20: 305. Published online 2019 Jun 4. doi: 10.1186/s12859-019-2878-2

PMCID:: PMC6549370

Select item 64920102.

Highly Diverse Hepatitis C Strains Detected in Sub‐Saharan Africa Have Unknown Susceptibility to Direct‐Acting Antiviral Treatments

Chris Davis, George S. Mgomella, Ana da Silva Filipe, Eric H. Frost, Genevieve Giroux, Joseph Hughes, Catherine Hogan, Pontiano Kaleebu, Gershim Asiki, John McLauchlan, Marc Niebel, Ponsiano Ocama, Cristina Pomila, Oliver G. Pybus, Jacques Pépin, Peter Simmonds, Joshua B. Singer, Vattipally B. Sreenu, Clara Wekesa, Elizabeth H. Young, Donald G. Murphy, Manj Sandhu, Emma C. Thomson

Hepatology. 2019 Apr; 69(4): 1426–1441. Published online 2019 Mar 22. doi: 10.1002/hep.30342

PMCID:: PMC6492010

Abstract Article PDF–775K

Select item 64787433.

Multiple myeloma immunoglobulin lambda translocations portend poor prognosis

Benjamin G. Barwick, Paola Neri, Nizar J. Bahlis, Ajay K. Nooka, Madhav V. Dhodapkar, David L. Jaye, Craig C. Hofmeister, Jonathan L. Kaufman, Vikas A. Gupta, Daniel Auclair, Jonathan J. Keats, Sagar Lonial, Paula M. Vertino, Lawrence H. Boise

Nat Commun. 2019; 10: 1911. Published online 2019 Apr 23. doi: 10.1038/s41467-019-09555-6

PMCID:: PMC6478743

Abstract Article PDF–9.0M

Select item 58537604.

Improved reverse transcription-polymerase chain reaction assay for the detection of flaviviruses with semi-nested primers for discrimination between dengue virus serotypes and Zika virus

Allan RD Nunes, Brenda Elen B Alves, Hannaly WB Pereira, Yasmin M Nascimento, Ingryd C Morais, José Veríssimo Fernandes, Josélio MG Araújo, Daniel CF Lanza

Mem Inst Oswaldo Cruz. 2018; 113(5): e170393. Published online 2018 Feb 26. doi: 10.1590/0074-02760170393

PMCID:: PMC5853760

Abstract Article PDF–1.2M

Select item 57215255.

Presence of Human Hepegivirus-1 in a Cohort of People Who Inject Drugs

Abraham J. Kandathil, Florian P. Breitwieser, Jaiprasath Sachithanandham, Matthew Robinson, Shruti H. Mehta, Winston Timp, Steven L. Salzberg, David L. Thomas, Ashwin Balagopal

Ann Intern Med. Author manuscript; available in PMC 2018 Mar 30.

Published in final edited form as: Ann Intern Med. 2017 Jul 4; 167(1): 1–7. Published online 2017 Jun 6. doi: 10.7326/M17-0085

PMCID:: PMC5721525

Abstract Article PDF–761K

Select item 51114596.

Bioinformatic Analysis of Codon Usage and Phylogenetic Relationships in Different Genotypes of the Hepatitis C Virus

Mojtaba Mortazavi, Mohammad Zarenezhad, Seyed Moayed Alavian, Saeed Gholamzadeh, Abdorrasoul Malekpour, Mohammad Ghorbani, Masoud Torkzadeh Mahani, Safa Lotfi, Ali Fakhrzad

Hepat Mon. 2016 Oct; 16(10): e39196. Published online 2016 Sep 10. doi: 10.5812/hepatmon.39196

PMCID:: PMC5111459

Abstract Article PDF–348K

Select item 48597047.

Ion Channel Function and Cross-Species Determinants in Viral Assembly of Nonprimate Hepacivirus p7

Stephanie Walter, Alexander Bollenbach, Juliane Doerrbecker, Stephanie Pfaender, Richard J. P. Brown, Gabrielle Vieyres, Claire Scott, Richard Foster, Abhinav Kumar, Nicole Zitzmann, Stephen Griffin, François Penin, Thomas Pietschmann, Eike Steinmann

J Virol. 2016 May 15; 90(10): 5075–5089. Prepublished online 2016 Mar 9. Published online 2016 Apr 29. doi: 10.1128/JVI.00132-16

PMCID:: PMC4859704

Abstract Article PDF–3.2M

Select item 46766778.

Discovery of a Novel Human Pegivirus in Blood Associated with Hepatitis C Virus Co-Infection

Michael G. Berg, Deanna Lee, Kelly Coller, Matthew Frankel, Andrew Aronsohn, Kevin Cheng, Kenn Forberg, Marilee Marcinkus, Samia N. Naccache, George Dawson, Catherine Brennan, Donald M. Jensen, John Hackett, Jr., Charles Y. Chiu

PLoS Pathog. 2015 Dec; 11(12): e1005325. Published online 2015 Dec 11. doi: 10.1371/journal.ppat.1005325

Correction in:: PLoS Pathog. 2016 Jan; 12(1): e1005386.

PMCID:: PMC4676677

Abstract Article PDF–2.0M

Select item 41358809.

Hepatitis C Virus Genotype 5a Subgenomic Replicons for Evaluation of Direct-Acting Antiviral Agents

Constance N. Wose Kinge, Christine Espiritu, Nishi Prabdial-Sing, Nomathamsaqa Patricia Sithebe, Mohsan Saeed, Charles M. Rice

Antimicrob Agents Chemother. 2014 Sep; 58(9): 5386–5394. doi: 10.1128/AAC.03534-14

PMCID:: PMC4135880

Abstract Article PDF–1.2M

Select item 399326110.

Hepatitis C Virus Genetic Variability and the Presence of NS5B Resistance-Associated Mutations as Natural Polymorphisms in Selected Genotypes Could Affect the Response to NS5B Inhibitors

V. C. Di Maio, V. Cento, C. Mirabelli, A. Artese, G. Costa, S. Alcaro, C. F. Perno, F. Ceccherini-Silberstein

Antimicrob Agents Chemother. 2014 May; 58(5): 2781–2797. doi: 10.1128/AAC.02386-13

PMCID:: PMC3993261

Abstract Article PDF–3.1M

Select item 397800311.

Characteristics of HCV Co-Infection among HIV Infected Individuals from an Area with High Risk of Blood-Borne Infections in Central China

Tiejun Zhang, Damien C. Tully, Sujuan Zhou, Na He

PLoS One. 2014; 9(4): e94219. Published online 2014 Apr 7. doi: 10.1371/journal.pone.0094219

PMCID:: PMC3978003

Abstract Article PDF–927K

Select item 375408112.

A Novel Hepacivirus with an Unusually Long and Intrinsically Disordered NS5A Protein in a Wild Old World Primate

Michael Lauck, Samuel D. Sibley, James Lara, Michael A. Purdy, Yury Khudyakov, David Hyeroba, Alex Tumukunde, Geoffrey Weny, William M. Switzer, Colin A. Chapman, Austin L. Hughes, Thomas C. Friedrich, David H. O'Connor, Tony L. Goldberg

J Virol. 2013 Aug; 87(16): 8971–8981. doi: 10.1128/JVI.00888-13

PMCID:: PMC3754081

Abstract Article PDF–1.0M

Select item 364813513.

Systematic Analysis of Enhancer and Critical cis-Acting RNA Elements in the Protein-Encoding Region of the Hepatitis C Virus Genome

Derrick Chu, Songyang Ren, Stacy Hu, Wei Gang Wang, Aparna Subramanian, Deisy Contreras, Vidhya Kanagavel, Eric Chung, Justine Ko, Ranjit Singh Amirtham Jacob Appadorai, Sanjeev Sinha, Ziba Jalali, David W. Hardy, Samuel W. French, Vaithilingaraja Arumugaswami

J Virol. 2013 May; 87(10): 5678–5696. doi: 10.1128/JVI.00840-12

PMCID:: PMC3648135

Abstract Article PDF–3.0M

Select item 350880114.

Short hairpin-looped oligodeoxynucleotides reduce hepatitis C virus replication

Felix Broecker, Karin Moelling

Virol J. 2012; 9: 134. Published online 2012 Jul 23. doi: 10.1186/1743-422X-9-134

PMCID:: PMC3508801

Abstract Article PDF–816K

Select item 345739315.

Multiple Mutations in Hepatitis C Virus NS5A Domain II Are Required To Confer a Significant Level of Resistance to Alisporivir

Jose A. Garcia-Rivera, Michael Bobardt, Udayan Chatterji, Sam Hopkins, Matthew A. Gregory, Barrie Wilkinson, Kai Lin, Philippe A. Gallay

Antimicrob Agents Chemother. 2012 Oct; 56(10): 5113–5121. doi: 10.1128/AAC.00919-12

PMCID:: PMC3457393

Abstract Article PDF–1.9M

Select item 339119716.

HCV Genotypes Are Differently Prone to the Development of Resistance to Linear and Macrocyclic Protease Inhibitors

Valeria Cento, Carmen Mirabelli, Romina Salpini, Salvatore Dimonte, Anna Artese, Giosuè Costa, Fabio Mercurio, Valentina Svicher, Lucia Parrotta, Ada Bertoli, Marco Ciotti, Daniele Di Paolo, Cesare Sarrecchia, Massimo Andreoni, Stefano Alcaro, Mario Angelico, Carlo Federico Perno, Francesca Ceccherini-Silberstein

PLoS One. 2012; 7(7): e39652. Published online 2012 Jul 6. doi: 10.1371/journal.pone.0039652

PMCID:: PMC3391197

Abstract Article PDF–2.2M

Select item 327030317.

Near-Full Genome Characterisation of Two Natural Intergenotypic 2k/1b Recombinant Hepatitis C Virus Isolates

Victoria L. Demetriou, Eftychia Kyriakou, Leondios G. Kostrikis

Adv Virol. 2011; 2011: 710438. Published online 2011 May 15. doi: 10.1155/2011/710438

PMCID:: PMC3270303

Abstract Article PDF–2.0M

Select item 286378418.

Development of an Intergenotypic Hepatitis C Virus (HCV) Cell Culture Method To Assess Antiviral Susceptibilities and Resistance Development of HCV NS3 Protease Genes from HCV Genotypes 1 to 6

Ingrid Imhof, Peter Simmonds

J Virol. 2010 May; 84(9): 4597–4610. Published online 2010 Feb 17. doi: 10.1128/JVI.02698-09

PMCID:: PMC2863784

Abstract Article PDF–1.6M

Select item 273816319.

Hepatitis C Virus NS2 Protein Contributes to Virus Particle Assembly via Opposing Epistatic Interactions with the E1-E2 Glycoprotein and NS3-NS4A Enzyme Complexes

Tung Phan, Rudolf K. F. Beran, Christopher Peters, Ivo C. Lorenz, Brett D. Lindenbach

J Virol. 2009 Sep; 83(17): 8379–8395. Published online 2009 Jun 10. doi: 10.1128/JVI.00891-09

PMCID:: PMC2738163

Abstract Article PDF–3.2M

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