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Select item 28893511.

Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea

C. B. Walker, J. R. de la Torre, M. G. Klotz, H. Urakawa, N. Pinel, D. J. Arp, C. Brochier-Armanet, P. S. G. Chain, P. P. Chan, A. Gollabgir, J. Hemp, M. Hügler, E. A. Karr, M. Könneke, M. Shin, T. J. Lawton, T. Lowe, W. Martens-Habbena, L. A. Sayavedra-Soto, D. Lang, S. M. Sievert, A. C. Rosenzweig, G. Manning, D. A. Stahl

Proc Natl Acad Sci U S A. 2010 May 11; 107(19): 8818–8823. Published online 2010 Apr 26. doi: 10.1073/pnas.0913533107

PMCID:: PMC2889351

Abstract Article PDF–631K

Select item 66974402.

Comparative Genomics Reveals Ecological and Evolutionary Insights into Sponge-Associated Thaumarchaeota

Shan Zhang, Weizhi Song, Bernd Wemheuer, Julie Reveillaud, Nicole Webster, Torsten Thomas

mSystems. 2019 Jul-Aug; 4(4): e00288-19. Published online 2019 Aug 13. doi: 10.1128/mSystems.00288-19

PMCID:: PMC6697440

Abstract Article PDF–3.2M

Select item 58810493.

Nitrogen Cycle Evaluation (NiCE) Chip for Simultaneous Analysis of Multiple N Cycle-Associated Genes

Mamoru Oshiki, Takahiro Segawa, Satoshi Ishii

Appl Environ Microbiol. 2018 Apr 15; 84(8): e02615-17. Prepublished online 2018 Feb 2. Published online 2018 Apr 2. doi: 10.1128/AEM.02615-17

PMCID:: PMC5881049

Abstract Article PDF–972K

Select item 57974284.

Candidatus Nitrosocaldus cavascurensis, an Ammonia Oxidizing, Extremely Thermophilic Archaeon with a Highly Mobile Genome

Sophie S. Abby, Michael Melcher, Melina Kerou, Mart Krupovic, Michaela Stieglmeier, Claudia Rossel, Kevin Pfeifer, Christa Schleper

Front Microbiol. 2018; 9: 28. Published online 2018 Jan 26. doi: 10.3389/fmicb.2018.00028

PMCID:: PMC5797428

Abstract Article PDF–4.2M

Select item 57677555.

Ammonia‐oxidising archaea living at low pH: Insights from comparative genomics

Craig W. Herbold, Laura E. Lehtovirta‐Morley, Man‐Young Jung, Nico Jehmlich, Bela Hausmann, Ping Han, Alexander Loy, Michael Pester, Luis A. Sayavedra‐Soto, Sung‐Keun Rhee, James I. Prosser, Graeme W. Nicol, Michael Wagner, Cécile Gubry‐Rangin

Environ Microbiol. 2017 Dec; 19(12): 4939–4952. Published online 2017 Dec 4. doi: 10.1111/1462-2920.13971

PMCID:: PMC5767755

Abstract Article PDF–714K

Select item 53255946.

Archaeal and bacterial communities in deep-sea hydrogenetic ferromanganese crusts on old seamounts of the northwestern Pacific

Shota Nitahara, Shingo Kato, Akira Usui, Tetsuro Urabe, Katsuhiko Suzuki, Akihiko Yamagishi

PLoS One. 2017; 12(2): e0173071. Published online 2017 Feb 24. doi: 10.1371/journal.pone.0173071

PMCID:: PMC5325594

Abstract Article PDF–6.5M

Select item 51504147.

Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers

Melina Kerou, Pierre Offre, Luis Valledor, Sophie S. Abby, Michael Melcher, Matthias Nagler, Wolfram Weckwerth, Christa Schleper

Proc Natl Acad Sci U S A. 2016 Dec 6; 113(49): E7937–E7946. Published online 2016 Nov 18. doi: 10.1073/pnas.1601212113

PMCID:: PMC5150414

Abstract Article PDF–1.4M

Select item 49119448.

Diversity and Distribution of Prokaryotes within a Shallow-Water Pockmark Field

Donato Giovannelli, Giuseppe d'Errico, Federica Fiorentino, Daniele Fattorini, Francesco Regoli, Lorenzo Angeletti, Tatjana Bakran-Petricioli, Costantino Vetriani, Mustafa Yücel, Marco Taviani, Elena Manini

Front Microbiol. 2016; 7: 941. Published online 2016 Jun 17. doi: 10.3389/fmicb.2016.00941

PMCID:: PMC4911944

Abstract Article PDF–5.8M

Select item 48449519.

Inhabitancy of active Nitrosopumilus-like ammonia-oxidizing archaea and Nitrospira nitrite-oxidizing bacteria in the sponge Theonella swinhoei

Guofang Feng, Wei Sun, Fengli Zhang, Loganathan Karthik, Zhiyong Li

Sci Rep. 2016; 6: 24966. Published online 2016 Apr 26. doi: 10.1038/srep24966

PMCID:: PMC4844951

Abstract Article PDF–1.8M

Select item 483950210.

Physiological and genomic characterization of two novel marine thaumarchaeal strains indicates niche differentiation

Barbara Bayer, Jana Vojvoda, Pierre Offre, Ricardo J E Alves, Nathalie H Elisabeth, Juan AL Garcia, Jean-Marie Volland, Abhishek Srivastava, Christa Schleper, Gerhard J Herndl

ISME J. 2016 May; 10(5): 1051–1063. Published online 2015 Nov 3. doi: 10.1038/ismej.2015.200

PMCID:: PMC4839502

Abstract Article PDF–1.6M

Select item 466035811.

Genomic and transcriptomic evidence for scavenging of diverse organic compounds by widespread deep-sea archaea

Meng Li, Brett J. Baker, Karthik Anantharaman, Sunit Jain, John A. Breier, Gregory J. Dick

Nat Commun. 2015; 6: 8933. Published online 2015 Nov 17. doi: 10.1038/ncomms9933

PMCID:: PMC4660358

Abstract Article PDF–310K

Select item 456194912.

Ecology and Distribution of Thaumarchaea in the Deep Hypolimnion of Lake Maggiore

Manuela Coci, Nina Odermatt, Michaela M. Salcher, Jakob Pernthaler, Gianluca Corno

Archaea. 2015; 2015: 590434. Published online 2015 Aug 25. doi: 10.1155/2015/590434

PMCID:: PMC4561949

Abstract Article PDF–1.3M

Select item 435118313.

Metagenome of a Microbial Community Inhabiting a Metal-Rich Tropical Stream Sediment

Patrícia S. Costa, Mariana P. Reis, Marcelo P. Ávila, Laura R. Leite, Flávio M. G. de Araújo, Anna C. M. Salim, Guilherme Oliveira, Francisco Barbosa, Edmar Chartone-Souza, Andréa M. A. Nascimento

PLoS One. 2015; 10(3): e0119465. Published online 2015 Mar 5. doi: 10.1371/journal.pone.0119465

PMCID:: PMC4351183

Abstract Article PDF–1.1M

Select item 413934014.

A Long-Term Cultivation of an Anaerobic Methane-Oxidizing Microbial Community from Deep-Sea Methane-Seep Sediment Using a Continuous-Flow Bioreactor

Masataka Aoki, Masayuki Ehara, Yumi Saito, Hideyoshi Yoshioka, Masayuki Miyazaki, Yayoi Saito, Ai Miyashita, Shuji Kawakami, Takashi Yamaguchi, Akiyoshi Ohashi, Takuro Nunoura, Ken Takai, Hiroyuki Imachi

PLoS One. 2014; 9(8): e105356. Published online 2014 Aug 20. doi: 10.1371/journal.pone.0105356

PMCID:: PMC4139340

Abstract Article PDF–3.0M

Select item 324624015.

High-throughput single-cell sequencing identifies photoheterotrophs and chemoautotrophs in freshwater bacterioplankton

Manuel Martinez-Garcia, Brandon K Swan, Nicole J Poulton, Monica Lluesma Gomez, Dashiell Masland, Michael E Sieracki, Ramunas Stepanauskas

ISME J. 2012 Jan; 6(1): 113–123. Published online 2011 Jun 30. doi: 10.1038/ismej.2011.84

PMCID:: PMC3246240

Abstract Article PDF–790K

Select item 317651416.

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

Daniel PR Herlemann, Matthias Labrenz, Klaus Jürgens, Stefan Bertilsson, Joanna J Waniek, Anders F Andersson

ISME J. 2011 Oct; 5(10): 1571–1579. Published online 2011 Apr 7. doi: 10.1038/ismej.2011.41

PMCID:: PMC3176514

Abstract Article PDF–825K

Select item 313186117.

Contribution of crenarchaeal autotrophic ammonia oxidizers to the dark primary production in Tyrrhenian deep waters (Central Mediterranean Sea)

Michail M Yakimov, Violetta La Cono, Francesco Smedile, Thomas H DeLuca, Silvia Juárez, Sergio Ciordia, Marisol Fernández, Juan Pablo Albar, Manuel Ferrer, Peter N Golyshin, Laura Giuliano

ISME J. 2011 Jun; 5(6): 945–961. Published online 2011 Jan 6. doi: 10.1038/ismej.2010.197

PMCID:: PMC3131861

Abstract Article PDF–2.9M

Select item 312760418.

Competing Formate- and Carbon Dioxide-Utilizing Prokaryotes in an Anoxic Methane-Emitting Fen Soil

Sindy Hunger, Oliver Schmidt, Maik Hilgarth, Marcus A. Horn, Steffen Kolb, Ralf Conrad, Harold L. Drake

Appl Environ Microbiol. 2011 Jun; 77(11): 3773–3785. doi: 10.1128/AEM.00282-11

PMCID:: PMC3127604

Abstract Article PDF–1.8M

Select item 297418719.

Characterization of Archaeal Community in Contaminated and Uncontaminated Surface Stream Sediments

Iris Porat, Tatiana A. Vishnivetskaya, Jennifer J. Mosher, Craig C. Brandt, Zamin K. Yang, Scott C. Brooks, Liyuan Liang, Meghan M. Drake, Mircea Podar, Steven D. Brown, Anthony V. Palumbo

Microb Ecol. 2010; 60(4): 784–795. Published online 2010 Aug 20. doi: 10.1007/s00248-010-9734-2

PMCID:: PMC2974187

Abstract Article PDF–483K

Select item 287300220.

The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods

Peter G. Foster, Cymon J. Cox, T. Martin Embley

Philos Trans R Soc Lond B Biol Sci. 2009 Aug 12; 364(1527): 2197–2207. doi: 10.1098/rstb.2009.0034

PMCID:: PMC2873002

Abstract Article PDF–500K

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