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Select item 1102371.

A Comprehensive Panel of Near-Full-Length Clones and Reference Sequences for Non-Subtype B Isolates of Human Immunodeficiency Virus Type 1

Feng Gao, David L. Robertson, Catherine D. Carruthers, Sandra G. Morrison, Bixi Jian, Yalu Chen, Françoise Barré-Sinoussi, Marc Girard, Alagarsamy Srinivasan, Alash’le G. Abimiku, George M. Shaw, Paul M. Sharp, Beatrice H. Hahn

J Virol. 1998 Jul; 72(7): 5680–5698. doi: 10.1128/jvi.72.7.5680-5698.1998

PMCID:: PMC110237

Abstract Article PDF–1.7M

Select item 41049912.

Identification of Amino Acids within the Second Alpha Helical Domain of the Human Immunodeficiency Virus type 1 Vpu that are Critical for Preventing CD4 Cell Surface Expression

M. Sarah Hill, Autumn Ruiz, Kimberly Schmitt, Edward B. Stephens

Virology. Author manuscript; available in PMC 2014 Jul 21.

Published in final edited form as: Virology. 2010 Feb 5; 397(1): 104–112. Published online 2009 Nov 27. doi: 10.1016/j.virol.2009.10.048

PMCID:: PMC4104991

Abstract Article PDF–2.4M

Select item 37789873.

Molecular typing of the recently expanding subtype B HIV-1 epidemic in Romania: Evidence for local spread among MSMs in Bucharest area

Simona Paraschiv, Dan Otelea, Ionelia Batan, Cristian Baicus, Gkikas Magiorkinis, Dimitrios Paraskevis

Infect Genet Evol. 2012 Jul; 12(5): 1052–1057. doi: 10.1016/j.meegid.2012.03.003

PMCID:: PMC3778987

Abstract Article PDF–439K

Select item 37497194.

Prevalence of Drug Resistance Mutations and HIV Type 1 Subtypes in an HIV Type 1-Infected Cohort in Rural Tanzania

Pax Masimba, Elimsaada Kituma, Thomas Klimkait, Edit Horvath, Marcel Stoeckle, Christoph Hatz, Erick Mossdorf, Emmanuel Mwaigomole, Salim Khamis, Boniphace Jullu, Salim Abdulla, Marcel Tanner, Ingrid Felger

AIDS Res Hum Retroviruses. 2013 Sep; 29(9): 1229–1236. doi: 10.1089/aid.2011.0367

PMCID:: PMC3749719

Abstract Article PDF–216K

Select item 37096115.

Effects of Tat proteins and Tat mutants of different human immunodeficiency virus type 1 clades on glial JC virus early and late gene transcription

Clayton A. Wright, Jonas A. Nance, Edward M. Johnson

J Gen Virol. 2013 Mar; 94(Pt 3): 514–523. doi: 10.1099/vir.0.047902-0

PMCID:: PMC3709611

Abstract Article PDF–1.1M

Select item 33995586.

Phylogenetic Analysis of the Latvian HIV-1 Epidemic

Dace Balode, Helena Skar, Mattias Mild, Tatjana Kolupajeva, Andris Ferdats, Baiba Rozentale, Thomas Leitner, Jan Albert

AIDS Res Hum Retroviruses. 2012 Aug; 28(8): 928–932. doi: 10.1089/aid.2011.0310

PMCID:: PMC3399558

Abstract Article PDF–180K

Select item 29813807.

Identification and Characterization of CRF02_AG, CRF06_cpx, and CRF09_cpx Recombinant Subtypes in Mali, West Africa

Hiromi Imamichi, Ousmane Koita, Djeneba Dabitao, Sounkalo Dao, Mahamadou Ibrah, Dramane Sogoba, Robin L. Dewar, Steve C. Berg, Min-Kang Jiang, Mark Parta, Janice A. Washington, Michael A. Polis, H. Clifford Lane, Anatole Tounkara

AIDS Res Hum Retroviruses. 2009 Jan; 25(1): 45–55. doi: 10.1089/aid.2008.0111

PMCID:: PMC2981380

Abstract Article PDF–304K

Select item 27690748.

HIV-1 Integrase Interaction with U3 and U5 Terminal Sequences in Vitro Defined Using Substrates with Random Sequences

Elena Brin, Jonathan Leis

J Biol Chem. Author manuscript; available in PMC 2009 Oct 28.

Published in final edited form as: J Biol Chem. 2002 May 24; 277(21): 18357–18364. Published online 2002 Mar 15. doi: 10.1074/jbc.M201354200

PMCID:: PMC2769074

Abstract Article PDF–950K

Select item 26746629.

Sources of variation in ancestral sequence reconstruction for HIV-1 envelope genes

Howard A. Ross, David C. Nickle, Yi Liu, Laura Heath, Mark A. Jensen, Allen G. Rodrigo, James I. Mullins

Evol Bioinform Online. 2006; 2: 53–76. Published online 2007 Jan 13.

PMCID:: PMC2674662

Abstract Article PDF–6.6M

Select item 263094110.

Conserved positive selection signals in gp41 across multiple subtypes and difference in selection signals detectable in gp41 sequences sampled during acute and chronic HIV-1 subtype C infection

Gama P Bandawe, Darren P Martin, Florette Treurnicht, Koleka Mlisana, Salim S Abdool Karim, Carolyn Williamson, The CAPRISA 002 Acute Infection Study Team

Virol J. 2008; 5: 141. Published online 2008 Nov 24. doi: 10.1186/1743-422X-5-141

PMCID:: PMC2630941

Abstract Article PDF–522K

Select item 259735711.

Human Immunodeficiency Virus Type 1 Reverse-Transcriptase and Protease Subtypes: Classification, Amino Acid Mutation Patterns, and Prevalence in a Northern California Clinic-Based Population

Matthew J. Gonzales, Rhoderick N. Machekano, Robert W. Shafer

J Infect Dis. Author manuscript; available in PMC 2008 Dec 8.

Published in final edited form as: J Infect Dis. 2001 Oct 15; 184(8): 998–1006. Published online 2001 Sep 10. doi: 10.1086/323601

PMCID:: PMC2597357

Abstract Article PDF–1.0M

Select item 257339212.

Identification of Ugandan HIV Type 1 Variants with Unique Patterns of Recombination in pol Involving Subtypes A and D

SUSAN H. ESHLEMAN, MATTHEW J. GONZALES, GRAZIELLA BECKER-PERGOLA, SHAWN C. CUNNINGHAM, LAURA A. GUAY, J. BROOKS JACKSON, ROBERT W. SHAFER

AIDS Res Hum Retroviruses. Author manuscript; available in PMC 2008 Oct 27.

Published in final edited form as: AIDS Res Hum Retroviruses. 2002 May 1; 18(7): 507–511. doi: 10.1089/088922202317406655

PMCID:: PMC2573392

Abstract Article PDF–811K

Select item 229274313.

Exceptional molecular and coreceptor-requirement properties of molecular clones isolated from an Human Immunodeficiency Virus Type-1 subtype C infection

Prasanta K Dash, Nagadenahalli B Siddappa, Asokan Mangaiarkarasi, Aruna V Mahendarkar, Padmanabhan Roshan, Krishnamurthy Kumar Anand, Anita Mahadevan, Parthasarathy Satishchandra, Susarla K Shankar, Vinayaka R Prasad, Udaykumar Ranga

Retrovirology. 2008; 5: 25. Published online 2008 Mar 7. doi: 10.1186/1742-4690-5-25

Expression of Concern in:: Retrovirology. 2024; 21: 19.

PMCID:: PMC2292743

Abstract Article PDF–1.3M

Select item 137048814.

Efficiency of a programmed −1 ribosomal frameshift in the different subtypes of the human immunodeficiency virus type 1 group M

MARTIN BARIL, DOMINIC DULUDE, KARINE GENDRON, GUY LEMAY, LÉA BRAKIER-GINGRAS

RNA. 2003 Oct; 9(10): 1246–1253. doi: 10.1261/rna.5113603

PMCID:: PMC1370488

Abstract Article PDF–284K

Select item 124847015.

Use of Sequence Data Generated in the Bayer TruGene Genotyping Assay To Recognize and Characterize Non-Subtype-B Human Immunodeficiency Virus Type 1 Strains

Diane L. Hirigoyen, Charles P. Cartwright

J Clin Microbiol. 2005 Oct; 43(10): 5263–5271. doi: 10.1128/JCM.43.10.5263-5271.2005

PMCID:: PMC1248470

Abstract Article PDF–342K

Select item 54411416.

Evidence for Heterogeneous Selective Pressures in the Evolution of the env Gene in Different Human Immunodeficiency Virus Type 1 Subtypes

Simon A. A. Travers, Mary J. O'Connell, Grace P. McCormack, James O. McInerney

J Virol. 2005 Feb; 79(3): 1836–1841. doi: 10.1128/JVI.79.3.1836-1841.2005

PMCID:: PMC544114

Abstract Article PDF–181K

Select item 47848017.

Nucleotide and Amino Acid Polymorphisms at Drug Resistance Sites in Non-B-Subtype Variants of Human Immunodeficiency Virus Type 1

Dan Turner, Bluma Brenner, Daniela Moisi, Mervi Detorio, Raymond Cesaire, Takashi Kurimura, Haruyo Mori, Max Essex, Shlomo Maayan, Mark A. Wainberg

Antimicrob Agents Chemother. 2004 Aug; 48(8): 2993–2998. doi: 10.1128/AAC.48.8.2993-2998.2004

PMCID:: PMC478480

Abstract Article PDF–66K

Select item 42784418.

Performance of the Celera Diagnostics ViroSeq HIV-1 Genotyping System for Sequence-Based Analysis of Diverse Human Immunodeficiency Virus Type 1 Strains

Susan H. Eshleman, John Hackett, Jr., Priscilla Swanson, Shawn P. Cunningham, Birgit Drews, Catherine Brennan, Sushil G. Devare, Léopold Zekeng, Lazare Kaptué, Natalia Marlowe

J Clin Microbiol. 2004 Jun; 42(6): 2711–2717. doi: 10.1128/JCM.42.6.2711-2717.2004