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Select item 69241691.

A CRISPR/Cas9 library to map the HIV-1 provirus genetic fitness

K. E. YODER

Acta Virol. Author manuscript; available in PMC 2020 Jan 1.

Published in final edited form as: Acta Virol. 2019; 63(2): 129–138. doi: 10.4149/av_2019_201

PMCID:: PMC6924169

Abstract Article PDF–624K

Select item 64695252.

Current HIV Type 1 Molecular Epidemiology Profile and Identification of Unique Recombinant Forms in Jakarta, Indonesia

Ivo N. Sahbandar, Kiyomi Takahashi, Zubairi Djoerban, Iman Firmansyah, Satoshi Naganawa, Kazushi Motomura, Hironori Sato, Katsuhiko Kitamura, Herdiman T. Pohan, Shigehiro Sato

AIDS Res Hum Retroviruses. 2009 Jul 1; 25(7): 637–646. Published online 2009 Jul 21. doi: 10.1089/aid.2008.0266

PMCID:: PMC6469525

Abstract Article PDF–13M

Select item 64437503.

Earlier Initiation of Antiretroviral Treatment Coincides With an Initial Control of the HIV-1 Sub-Subtype F1 Outbreak Among Men-Having-Sex-With-Men in Flanders, Belgium

Lore Vinken, Katrien Fransen, Lize Cuypers, Ivailo Alexiev, Claudia Balotta, Laurent Debaisieux, Carole Seguin-Devaux, Sergio García Ribas, Perpétua Gomes, Francesca Incardona, Rolf Kaiser, Jean Ruelle, Murat Sayan, Simona Paraschiv, Roger Paredes, Martine Peeters, Anders Sönnerborg, Ellen Vancutsem, Anne-Mieke Vandamme, Sigi Van den Wijngaert, Marc Van Ranst, Chris Verhofstede, Tanja Stadler, Philippe Lemey, Kristel Van Laethem

Front Microbiol. 2019; 10: 613. Published online 2019 Mar 26. doi: 10.3389/fmicb.2019.00613

PMCID:: PMC6443750

Abstract Article PDF–4.9M

Select item 63690054.

No detection of CD4-independent human immunodeficiency virus 1 envelope glycoproteins in brain tissue of patients with or without neurological complications

Briana Quitadamo, Paul J. Peters, Matthew Koch, Katherine Luzuriaga, Cecilia Cheng-Mayer, Paul R. Clapham, Maria Paz Gonzalez-Perez

Arch Virol. 2019; 164(2): 473–482. Published online 2018 Nov 10. doi: 10.1007/s00705-018-4094-1

PMCID:: PMC6369005

Abstract Article PDF–1.0M

Select item 57490475.

First Appearance of HIV-1 CRF07_BC and CRF08_BC Outside China

Xin Chen, Mei Ye, Wei Pang, Davey M. Smith, Chiyu Zhang, Yong-Tang Zheng

AIDS Res Hum Retroviruses. 2017 Jan 1; 33(1): 74–76. Published online 2017 Jan 1. doi: 10.1089/aid.2016.0169

PMCID:: PMC5749047

Abstract Article PDF–379K

Select item 56255016.

Identification of Emerging Macrophage-Tropic HIV-1 R5 Variants in Brain Tissue of AIDS Patients without Severe Neurological Complications

Maria Paz Gonzalez-Perez, Paul J. Peters, Olivia O'Connell, Nilsa Silva, Carole Harbison, Sheila Cummings Macri, Saravanan Kaliyaperumal, Katherine Luzuriaga, Paul R. Clapham

J Virol. 2017 Oct 15; 91(20): e00755-17. Prepublished online 2017 Aug 2. Published online 2017 Sep 27. doi: 10.1128/JVI.00755-17

PMCID:: PMC5625501

Abstract Article PDF–3.0M

Select item 55861567.

The Indonesian Variants of CRF33_01B: Near-Full Length Sequence Analysis

Ivo N. SahBandar, Kiyomi Takahashi, Kazushi Motomura, Zubairi Djoerban, Iman Firmansyah, Katsuhiko Kitamura, Hironori Sato, Herdiman T. Pohan, Shigehiro Sato

AIDS Res Hum Retroviruses. 2011 Jan; 27(1): 97–102. Published online 2011 Jan 1. doi: 10.1089/aid.2010.0163

PMCID:: PMC5586156

Abstract Article PDF–589K

Select item 55383348.

First description of two new HIV-1 recombinant forms CRF82_cpx and CRF83_cpx among drug users in Northern Myanmar

Xin Chen, Mei Ye, Lin Duo, Wei Pang, Davey Smith, Chiyu Zhang, Yong-Tang Zheng

Virulence. 2017; 8(5): 497–503. Published online 2016 Aug 30. doi: 10.1080/21505594.2016.1226722

PMCID:: PMC5538334

Article PDF–1.0M

Select item 48904719.

Short-term treatment outcomes in human immunodeficiency virus type-1 and hepatitis B virus co-infections

Kwamena William Coleman Sagoe, Kwabena Obeng Duedu, Francesca Ziga, Afrakoma Adjoa Agyei, Theophilus Korku Adiku, Margaret Lartey, Julius Abraham Addo Mingle, Max Arens

Ann Clin Microbiol Antimicrob. 2016; 15: 38. Published online 2016 Jun 2. doi: 10.1186/s12941-016-0152-2

PMCID:: PMC4890471

Abstract Article PDF–809K

Select item 468747310.

The external domains of the HIV-1 envelope are a mutational cold spot

Ron Geller, Pilar Domingo-Calap, José M. Cuevas, Paola Rossolillo, Matteo Negroni, Rafael Sanjuán

Nat Commun. 2015; 6: 8571. Published online 2015 Oct 9. doi: 10.1038/ncomms9571

PMCID:: PMC4687473

Abstract Article PDF–882K

Select item 457415511.

Extremely High Mutation Rate of HIV-1 In Vivo

José M. Cuevas, Ron Geller, Raquel Garijo, José López-Aldeguer, Rafael Sanjuán

PLoS Biol. 2015 Sep; 13(9): e1002251. Published online 2015 Sep 16. doi: 10.1371/journal.pbio.1002251

PMCID:: PMC4574155

Abstract Article PDF–1.1M

Select item 456336012.

Comparison of digital PCR platforms and semi-nested qPCR as a tool to determine the size of the HIV reservoir

K. J. Bosman, M. Nijhuis, P. M. van Ham, A. M. J. Wensing, K. Vervisch, L. Vandekerckhove, W. De Spiegelaere

Sci Rep. 2015; 5: 13811. Published online 2015 Sep 9. doi: 10.1038/srep13811

PMCID:: PMC4563360

Abstract Article PDF–1.0M

Select item 449304713.

Stability of HIV-1 Nucleic Acids in Dried Blood Spot Samples for HIV-1 Drug Resistance Genotyping

Susan C. Aitken, Carole L. Wallis, Wendy Stevens, Tobias Rinke de Wit, Rob Schuurman

PLoS One. 2015; 10(7): e0131541. Published online 2015 Jul 6. doi: 10.1371/journal.pone.0131541

PMCID:: PMC4493047

Abstract Article PDF–212K

Select item 440303614.

Molecular characterization of full-length Tat in HIV-1 subtypes B and C

Chandra Nath Roy, Irona Khandaker, Yuki Furuse, Hitoshi Oshitani

Bioinformation. 2015; 11(3): 151–160. Published online 2015 Mar 31. doi: 10.6026/97320630011151

PMCID:: PMC4403036

Abstract Article PDF–418K

Select item 415486715.

Subtype Classification of Iranian HIV-1 Sequences Registered in the HIV Databases, 2006-2013

Kazem Baesi, Samaneh Moallemi, Molood Farrokhi, Seyed Ahmad Seyed Alinaghi, Hong–Ha M. Truong

PLoS One. 2014; 9(9): e105098. Published online 2014 Sep 4. doi: 10.1371/journal.pone.0105098

PMCID:: PMC4154867

Abstract Article PDF–304K

Select item 413594416.

Association between Latent Proviral Characteristics and Immune Activation in Antiretrovirus-Treated Human Immunodeficiency Virus Type 1-Infected Adults

Emily C. Liang, Lindsay Sceats, Nicholas L. Bayless, Dara M. Strauss-Albee, Jessica Kubo, Philip M. Grant, David Furman, Manisha Desai, David A. Katzenstein, Mark M. Davis, Andrew R. Zolopa, Catherine A. Blish

J Virol. 2014 Aug; 88(15): 8629–8639. doi: 10.1128/JVI.01257-14

PMCID:: PMC4135944

Abstract Article PDF–1.5M

Select item 393894717.

Short Communication: Molecular Epidemiology of HIV Type 1 Infection in Northern Greece (2009–2010): Evidence of a Transmission Cluster of HIV Type 1 Subtype A1 Drug-Resistant Strains Among Men Who Have Sex with Men

Zoi-Anna Antoniadou, Ioanna Kousiappa, Lemonia Skoura, Dimitris Pilalas, Simeon Metallidis, Pavlos Nicolaidis, Nicolaos Malisiovas, Leondios G. Kostrikis

AIDS Res Hum Retroviruses. 2014 Mar 1; 30(3): 225–232. doi: 10.1089/aid.2013.0166

PMCID:: PMC3938947

Abstract Article PDF–198K

Select item 386515618.

Highly-Sensitive Allele-Specific PCR Testing Identifies a Greater Prevalence of Transmitted HIV Drug Resistance in Japan

Masako Nishizawa, Junko Hattori, Teiichiro Shiino, Tetsuro Matano, Walid Heneine, Jeffrey A. Johnson, Wataru Sugiura

PLoS One. 2013; 8(12): e83150. Published online 2013 Dec 16. doi: 10.1371/journal.pone.0083150

PMCID:: PMC3865156

Abstract Article PDF–582K

Select item 371610319.

A Pragmatic Approach to HIV-1 Drug Resistance Determination in Resource-Limited Settings by Use of a Novel Genotyping Assay Targeting the Reverse Transcriptase-Encoding Region Only

Susan C. Aitken, Michelle Bronze, Carole L. Wallis, Lieven Stuyver, Kim Steegen, Sheila Balinda, Cissy Kityo, Wendy Stevens, Tobias F. Rinke de Wit, Rob Schuurman

J Clin Microbiol. 2013 Jun; 51(6): 1757–1761. doi: 10.1128/JCM.00118-13

PMCID:: PMC3716103

Abstract Article PDF–136K

Select item 371604820.

Development and Evaluation of an Affordable Real-Time Qualitative Assay for Determining HIV-1 Virological Failure in Plasma and Dried Blood Spots

Susan C. Aitken, Aletta Kliphuis, Michelle Bronze, Carole L. Wallis, Cissy Kityo, Sheila Balinda, Wendy Stevens, Nicole Spieker, Tulio de Oliveira, Tobias F. Rinke de Wit, Rob Schuurman

J Clin Microbiol. 2013 Jun; 51(6): 1899–1905. doi: 10.1128/JCM.03305-12

PMCID:: PMC3716048

Abstract Article PDF–476K

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