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Items: 1 to 20 of 27

1.
Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla
Michael A. Mahowald, Federico E. Rey, Henning Seedorf, Peter J. Turnbaugh, Robert S. Fulton, Aye Wollam, Neha Shah, Chunyan Wang, Vincent Magrini, Richard K. Wilson, Brandi L. Cantarel, Pedro M. Coutinho, Bernard Henrissat, Lara W. Crock, Alison Russell, Nathan C. Verberkmoes, Robert L. Hettich, Jeffrey I. Gordon
Proc Natl Acad Sci U S A. 2009 Apr 7; 106(14): 5859–5864. Published online 2009 Mar 24. doi: 10.1073/pnas.0901529106
PMCID:
PMC2660063
AbstractArticlePDF–604K
2.
Baseline human gut microbiota profile in healthy people and standard reporting template
Charles H. King, Hiral Desai, Allison C. Sylvetsky, Jonathan LoTempio, Shant Ayanyan, Jill Carrie, Keith A. Crandall, Brian C. Fochtman, Lusine Gasparyan, Naila Gulzar, Paul Howell, Najy Issa, Konstantinos Krampis, Lopa Mishra, Hiroki Morizono, Joseph R. Pisegna, Shuyun Rao, Yao Ren, Vahan Simonyan, Krista Smith, Sharanjit VedBrat, Michael D. Yao, Raja Mazumder
PLoS One. 2019; 14(9): e0206484. Published online 2019 Sep 11. doi: 10.1371/journal.pone.0206484
PMCID:
PMC6738582
AbstractArticlePDF–2.6M
3.
Engineered Interspecies Amino Acid Cross-Feeding Increases Population Evenness in a Synthetic Bacterial Consortium
Marika Ziesack, Travis Gibson, John K. W. Oliver, Andrew M. Shumaker, Bryan B. Hsu, David T. Riglar, Tobias W. Giessen, Nicholas V. DiBenedetto, Lynn Bry, Jeffrey C. Way, Pamela A. Silver, Georg K. Gerber
mSystems. 2019 Jul-Aug; 4(4): e00352-19. Published online 2019 Aug 13. doi: 10.1128/mSystems.00352-19
PMCID:
PMC6697442
AbstractArticlePDF–504K
4.
Combining multiple functional annotation tools increases coverage of metabolic annotation
Marc Griesemer, Jeffrey A. Kimbrel, Carol E. Zhou, Ali Navid, Patrik D’haeseleer
BMC Genomics. 2018; 19: 948. Published online 2018 Dec 19. doi: 10.1186/s12864-018-5221-9
PMCID:
PMC6299973
AbstractArticlePDF–1.0M
5.
Characterization of a glycoside hydrolase family 78 α-l-rhamnosidase from Bacteroides thetaiotaomicron VPI-5482 and identification of functional residues
Binchun Li, Yaru Ji, Yanqin Li, Guobin Ding
3 Biotech. 2018 Feb; 8(2): 120. Published online 2018 Feb 8. doi: 10.1007/s13205-018-1139-9
PMCID:
PMC5805665
AbstractArticlePDF–4.5M
6.
The Glycolytic Versatility of Bacteroides uniformis CECT 7771 and Its Genome Response to Oligo and Polysaccharides
Alfonso Benítez-Páez, Eva M. Gómez del Pulgar, Yolanda Sanz
Front Cell Infect Microbiol. 2017; 7: 383. Published online 2017 Aug 25. doi: 10.3389/fcimb.2017.00383
PMCID:
PMC5609589
AbstractArticlePDF–2.8M
7.
Metabolic, Epigenetic, and Transgenerational Effects of Gut Bacterial Choline Consumption
Kymberleigh A. Romano, Ana Martinez-del Campo, Kazuyuki Kasahara, Carina L. Chittim, Eugenio I. Vivas, Daniel Amador-Noguez, Emily P. Balskus, Federico E. Rey
Cell Host Microbe. Author manuscript; available in PMC 2018 Sep 13.
Published in final edited form as: Cell Host Microbe. 2017 Sep 13; 22(3): 279–290.e7. Published online 2017 Aug 24. doi: 10.1016/j.chom.2017.07.021
PMCID:
PMC5599363
AbstractArticlePDF–1.0M
8.
Programming a Human Commensal Bacterium, Bacteroides thetaiotaomicron, to Sense and Respond to Stimuli in the Murine Gut Microbiota
Mark Mimee, Alex C. Tucker, Christopher A. Voigt, Timothy K. Lu
Cell Syst. Author manuscript; available in PMC 2016 Jul 29.
Published in final edited form as: Cell Syst. 2015 Jul 29; 1(1): 62–71. doi: 10.1016/j.cels.2015.06.001
PMCID:
PMC4762051
AbstractArticlePDF–1.5M
9.
Bacterial metabolites directly modulate farnesoid X receptor activity
Xianqin Zhang, Toshifumi Osaka, Satoshi Tsuneda
Nutr Metab (Lond) 2015; 12: 48. Published online 2015 Nov 24. doi: 10.1186/s12986-015-0045-y
PMCID:
PMC4657204
AbstractArticlePDF–2.3M
10.
Spatial Variation of the Gut Microbiota in Broiler Chickens as Affected by Dietary Available Phosphorus and Assessed by T-RFLP Analysis and 454 Pyrosequencing
Maren Witzig, Amelia Camarinha da Silva, Rebecca Green-Engert, Katharina Hoelzle, Ellen Zeller, Jana Seifert, Ludwig E. Hoelzle, Markus Rodehutscord
PLoS One. 2015; 10(11): e0143442. Published online 2015 Nov 20. doi: 10.1371/journal.pone.0143442
Correction in:
PLoS One. 2015; 10(12): e0145588.
PMCID:
PMC4654470
AbstractArticlePDF–1.3M
11.
Metronidazole- and Carbapenem-Resistant Bacteroides thetaiotaomicron Isolated in Rochester, Minnesota, in 2014
Sapna P. Sadarangani, Scott A. Cunningham, Patricio R. Jeraldo, John W. Wilson, Reeti Khare, Robin Patel
Antimicrob Agents Chemother. 2015 Jul; 59(7): 4157–4161. Prepublished online 2015 May 4. Published online 2015 Jun 12. doi: 10.1128/AAC.00677-15
PMCID:
PMC4468676
AbstractArticlePDF–302K
12.
Characterizing the Interactions between a Naturally Primed Immunoglobulin A and Its Conserved Bacteroides thetaiotaomicron Species-specific Epitope in Gnotobiotic Mice
Daniel A. Peterson, Joseph D. Planer, Janaki L. Guruge, Lai Xue, Whitt Downey-Virgin, Andrew L. Goodman, Henning Seedorf, Jeffrey I. Gordon
J Biol Chem. 2015 May 15; 290(20): 12630–12649. Published online 2015 Mar 20. doi: 10.1074/jbc.M114.633800
PMCID:
PMC4432283
AbstractArticlePDF–4.7M
13.
Evaluation of methods to purify virus-like particles for metagenomic sequencing of intestinal viromes
Manuel Kleiner, Lora V Hooper, Breck A Duerkop
BMC Genomics. 2015; 16(1): 7. Published online 2015 Jan 22. doi: 10.1186/s12864-014-1207-4
PMCID:
PMC4308010
AbstractArticlePDF–811K
14.
Non-contiguous finished genome sequence of Phocaeicola abscessus type strain 7401987T
Véronique Roux, Catherine Robert, Didier Raoult
Stand Genomic Sci. 2013 Dec 20; 9(2): 351–358. Published online 2013 Dec 15. doi: 10.4056/sigs.4428244
PMCID:
PMC4062633
AbstractArticlePDF–3.0M
15.
Discovery of β-1,4-d-Mannosyl-N-acetyl-d-glucosamine Phosphorylase Involved in the Metabolism of N-Glycans
Takanori Nihira, Erika Suzuki, Motomitsu Kitaoka, Mamoru Nishimoto, Ken'ichi Ohtsubo, Hiroyuki Nakai
J Biol Chem. 2013 Sep 20; 288(38): 27366–27374. Published online 2013 Aug 13. doi: 10.1074/jbc.M113.469080
PMCID:
PMC3779731
AbstractArticlePDF–2.0M
16.
Identification of essential genes of the periodontal pathogen Porphyromonas gingivalis
Brian A Klein, Elizabeth L Tenorio, David W Lazinski, Andrew Camilli, Margaret J Duncan, Linden T Hu
BMC Genomics. 2012; 13: 578. Published online 2012 Oct 31. doi: 10.1186/1471-2164-13-578
PMCID:
PMC3547785
AbstractArticlePDF–2.6M
17.
Mucosa-associated bacteria in two middle-aged women diagnosed with collagenous colitis
Rita J Gustafsson, Bodil Ohlsson, Cecilia Benoni, Bengt Jeppsson, Crister Olsson
World J Gastroenterol. 2012 Apr 14; 18(14): 1628–1634. Published online 2012 Apr 14. doi: 10.3748/wjg.v18.i14.1628
PMCID:
PMC3325529
AbstractArticlePDF–766K
18.
Development and Application of a Polymicrobial in vitro Wound Biofilm Model
Jeremy Woods, Laura Boegli, Kelly R. Kirker, Alessandra M. Agostinho, Amanda M. Durch, Elinor deLancey Pulcini, Philip S. Stewart, Garth A. James
J Appl Microbiol. Author manuscript; available in PMC 2013 May 1.
Published in final edited form as: J Appl Microbiol. 2012 May; 112(5): 998–1006. Published online 2012 Mar 13. doi: 10.1111/j.1365-2672.2012.05264.x
PMCID:
PMC3324638
AbstractArticlePDF–1.0M
19.
RNIE: genome-wide prediction of bacterial intrinsic terminators
Paul P. Gardner, Lars Barquist, Alex Bateman, Eric P. Nawrocki, Zasha Weinberg
Nucleic Acids Res. 2011 Aug; 39(14): 5845–5852. Published online 2011 Apr 7. doi: 10.1093/nar/gkr168
PMCID:
PMC3152330
AbstractArticlePDF–1.7M
20.
Diversity and strength of internal outward-oriented promoters in group IIC-attC introns
Grégory Léon, Cecilia Quiroga, Daniela Centrón, Paul H. Roy
Nucleic Acids Res. 2010 Dec; 38(22): 8196–8207. Published online 2010 Aug 16. doi: 10.1093/nar/gkq709
PMCID:
PMC3001079
AbstractArticlePDF–3.2M

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