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Select item 33566291.

The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium

Carsten Kröger, Shane C. Dillon, Andrew D. S. Cameron, Kai Papenfort, Sathesh K. Sivasankaran, Karsten Hokamp, Yanjie Chao, Alexandra Sittka, Magali Hébrard, Kristian Händler, Aoife Colgan, Pimlapas Leekitcharoenphon, Gemma C. Langridge, Amanda J. Lohan, Brendan Loftus, Sacha Lucchini, David W. Ussery, Charles J. Dorman, Nicholas R. Thomson, Jörg Vogel, Jay C. D. Hinton

Proc Natl Acad Sci U S A. 2012 May 15; 109(20): E1277–E1286. Published online 2012 Apr 25. doi: 10.1073/pnas.1201061109

PMCID:: PMC3356629

Abstract Article PDF–1.8M

Select item 67531592.

An African Salmonella Typhimurium ST313 sublineage with extensive drug-resistance and signatures of host adaptation

Sandra Van Puyvelde, Derek Pickard, Koen Vandelannoote, Eva Heinz, Barbara Barbé, Tessa de Block, Simon Clare, Eve L. Coomber, Katherine Harcourt, Sushmita Sridhar, Emily A. Lees, Nicole E. Wheeler, Elizabeth J. Klemm, Laura Kuijpers, Lisette Mbuyi Kalonji, Marie-France Phoba, Dadi Falay, Dauly Ngbonda, Octavie Lunguya, Jan Jacobs, Gordon Dougan, Stijn Deborggraeve

Nat Commun. 2019; 10: 4280. Published online 2019 Sep 19. doi: 10.1038/s41467-019-11844-z

PMCID:: PMC6753159

Abstract Article PDF–1.3M

Select item 66141893.

Genomic Characterization of Jumbo Salmonella Phages That Effectively Target United Kingdom Pig-Associated Salmonella Serotypes

Anisha M. Thanki, Nathan Brown, Andrew D. Millard, Martha R. J. Clokie

Front Microbiol. 2019; 10: 1491. Published online 2019 Jul 2. doi: 10.3389/fmicb.2019.01491

PMCID:: PMC6614189

Abstract Article PDF–3.3M

Select item 65435424.

SGI-4 in Monophasic Salmonella Typhimurium ST34 Is a Novel ICE That Enhances Resistance to Copper

Priscilla Branchu, Oliver J. Charity, Matt Bawn, Gaetan Thilliez, Timothy J. Dallman, Liljana Petrovska, Robert A. Kingsley

Front Microbiol. 2019; 10: 1118. Published online 2019 May 24. doi: 10.3389/fmicb.2019.01118

PMCID:: PMC6543542

Abstract Article PDF–5.5M

Select item 63258885.

Retrospective application of transposon-directed insertion-site sequencing to investigate niche-specific virulence of Salmonella Typhimurium in cattle

Prerna Vohra, Roy R. Chaudhuri, Matthew Mayho, Christina Vrettou, Cosmin Chintoan-Uta, Nicholas R. Thomson, Jayne C. Hope, John Hopkins, Mark P. Stevens

BMC Genomics. 2019; 20: 20. Published online 2019 Jan 8. doi: 10.1186/s12864-018-5319-0

PMCID:: PMC6325888

Abstract Article PDF–1.9M

Select item 61234406.

New Variant of Multidrug-Resistant Salmonella enterica Serovar Typhimurium Associated with Invasive Disease in Immunocompromised Patients in Vietnam

Alison E. Mather, Tu Le Thi Phuong, Yunfeng Gao, Simon Clare, Subhankar Mukhopadhyay, David A. Goulding, Nhu Tran Do Hoang, Ha Thanh Tuyen, Nguyen Phu Huong Lan, Corinne N. Thompson, Nguyen Hoang Thu Trang, Juan Carrique-Mas, Ngo Tri Tue, James I. Campbell, Maia A. Rabaa, Duy Pham Thanh, Katherine Harcourt, Ngo Thi Hoa, Nguyen Vinh Trung, Constance Schultsz, Gabriel G. Perron, John E. Coia, Derek J. Brown, Chinyere Okoro, Julian Parkhill, Nicholas R. Thomson, Nguyen Van Vinh Chau, Guy E. Thwaites, Duncan J. Maskell, Gordon Dougan, Linda J. Kenney, Stephen Baker

mBio. 2018 Sep-Oct; 9(5): e01056-18. Published online 2018 Sep 4. doi: 10.1128/mBio.01056-18

PMCID:: PMC6123440

Abstract Article PDF–1.2M

Select item 58850137.

A novel prophage identified in strains from Salmonella enterica serovar Enteritidis is a phylogenetic signature of the lineage ST-1974

Bruno D'Alessandro, Victoria Pérez Escanda, Lucía Balestrazzi, Andrés Iriarte, Derek Pickard, Lucía Yim, José Alejandro Chabalgoity, Laura Betancor

Microb Genom. 2018 Mar; 4(3): e000161. Published online 2018 Mar 6. doi: 10.1099/mgen.0.000161

PMCID:: PMC5885013

Abstract Article PDF–2.8M

Select item 58364428.

Chlortetracycline and florfenicol induce expression of genes associated with pathogenicity in multidrug-resistant Salmonella enterica serovar Typhimurium

Devin B. Holman, Shawn M. D. Bearson, Bradley L. Bearson, Brian W. Brunelle

Gut Pathog. 2018; 10: 10. Published online 2018 Mar 5. doi: 10.1186/s13099-018-0236-y

PMCID:: PMC5836442

Abstract Article PDF–4.2M

Select item 57950759.

Quasimetagenomics-Based and Real-Time-Sequencing-Aided Detection and Subtyping of Salmonella enterica from Food Samples

Ji-Yeon Hyeon, Shaoting Li, David A. Mann, Shaokang Zhang, Zhen Li, Yi Chen, Xiangyu Deng

Appl Environ Microbiol. 2018 Feb 15; 84(4): e02340-17. Prepublished online 2017 Dec 1. Published online 2018 Jan 31. doi: 10.1128/AEM.02340-17

PMCID:: PMC5795075

Abstract Article PDF–1.1M

Select item 569478110.

speG Is Required for Intracellular Replication of Salmonella in Various Human Cells and Affects Its Polyamine Metabolism and Global Transcriptomes

Shiuh-Bin Fang, Ching-Jou Huang, Chih-Hung Huang, Ke-Chuan Wang, Nai-Wen Chang, Hung-Yin Pan, Hsu-Wei Fang, Ming-Te Huang, Ching-Kuo Chen

Front Microbiol. 2017; 8: 2245. Published online 2017 Nov 15. doi: 10.3389/fmicb.2017.02245

PMCID:: PMC5694781

Abstract Article PDF–2.8M

Select item 556356311.

Role of sapA and yfgA in Susceptibility to Antibody-Mediated Complement-Dependent Killing and Virulence of Salmonella enterica Serovar Typhimurium

Edna M. Ondari, Jennifer N. Heath, Elizabeth J. Klemm, Gemma Langridge, Lars Barquist, David A. Goulding, Simon Clare, Gordon Dougan, Robert A. Kingsley, Calman A. MacLennan

Infect Immun. 2017 Sep; 85(9): e00419-17. Prepublished online 2017 Jul 3. Published online 2017 Aug 18. doi: 10.1128/IAI.00419-17

PMCID:: PMC5563563

Abstract Article PDF–2.0M

Select item 555209612.

Transcriptome and proteome analysis of Salmonella enterica serovar Typhimurium systemic infection of wild type and immune-deficient mice

Olusegun Oshota, Max Conway, Maria Fookes, Fernanda Schreiber, Roy R. Chaudhuri, Lu Yu, Fiona J. E. Morgan, Simon Clare, Jyoti Choudhary, Nicholas R. Thomson, Pietro Lio, Duncan J. Maskell, Pietro Mastroeni, Andrew J. Grant

PLoS One. 2017; 12(8): e0181365. Published online 2017 Aug 10. doi: 10.1371/journal.pone.0181365

PMCID:: PMC5552096

Abstract Article PDF–8.1M

Select item 552107013.

Common and phylogenetically widespread coding for peptides by bacterial small RNAs

Robin C. Friedman, Stefan Kalkhof, Olivia Doppelt-Azeroual, Stephan A. Mueller, Martina Chovancová, Martin von Bergen, Benno Schwikowski

BMC Genomics. 2017; 18: 553. Published online 2017 Jul 21. doi: 10.1186/s12864-017-3932-y

PMCID:: PMC5521070

Abstract Article PDF–1.3M

Select item 551625714.

Lack of AcrB Efflux Function Confers Loss of Virulence on Salmonella enterica Serovar Typhimurium

Xuan Wang-Kan, Jessica M. A. Blair, Barbara Chirullo, Jonathan Betts, Roberto M. La Ragione, Alasdair Ivens, Vito Ricci, Timothy J. Opperman, Laura J. V. Piddock

mBio. 2017 Jul-Aug; 8(4): e00968-17. Published online 2017 Jul 18. doi: 10.1128/mBio.00968-17

PMCID:: PMC5516257

Abstract Article PDF–1.9M

Select item 511900215.

Whole-Genome Sequencing Identifies In Vivo Acquisition of a bla_CTX-M-27-Carrying IncFII Transmissible Plasmid as the Cause of Ceftriaxone Treatment Failure for an Invasive Salmonella enterica Serovar Typhimurium Infection

Bruce McCollister, Cassandra V. Kotter, Daniel N. Frank, Taylor Washburn, Michael G. Jobling

Antimicrob Agents Chemother. 2016 Dec; 60(12): 7224–7235. Prepublished online 2016 Sep 26. Published online 2016 Nov 21. doi: 10.1128/AAC.01649-16

Correction in:: Antimicrob Agents Chemother. 2017 Mar; 61(3): e00009-17.

PMCID:: PMC5119002

Abstract Article PDF–1.1M

Select item 501014116.

Studying RNA homology and conservation with Infernal: from single sequences to RNA families

Lars Barquist, Sarah W. Burge, Paul P. Gardner

Curr Protoc Bioinformatics. Author manuscript; available in PMC 2016 Dec 20.

Published in final edited form as: Curr Protoc Bioinformatics. 2016; 54: 12.13.1–12.13.25. Published online 2016 Jun 20. doi: 10.1002/cpbi.4

PMCID:: PMC5010141

Abstract Article PDF–2.7M

Select item 496349017.

Genomic and Phenotypic Analyses Reveal the Emergence of an Atypical Salmonella enterica Serovar Senftenberg Variant in China

Moataz Abd El Ghany, Xiaolu Shi, Yinghui Li, Hifzur R. Ansari, Grant A. Hill-Cawthorne, Y. S. Ho, Raeece Naeem, Derek Pickard, John D. Klena, Xuebing Xu, Arnab Pain, Qinghua Hu

J Clin Microbiol. 2016 Aug; 54(8): 2014–2022. Prepublished online 2016 May 25. Published online 2016 Jul 25. doi: 10.1128/JCM.00052-16

PMCID:: PMC4963490

Abstract Article PDF–1.3M

Select item 494300318.

Multiple adaptive routes of Salmonella enterica Typhimurium to biocide and antibiotic exposure

Tânia Curiao, Emmanuela Marchi, Denis Grandgirard, Ricardo León-Sampedro, Carlo Viti, Stephen L. Leib, Fernando Baquero, Marco R. Oggioni, José Luis Martinez, Teresa M. Coque

BMC Genomics. 2016; 17: 491. Published online 2016 Jul 13. doi: 10.1186/s12864-016-2778-z

PMCID:: PMC4943003

Abstract Article PDF–2.2M

Select item 484462519.

The Small RNA DsrA Influences the Acid Tolerance Response and Virulence of Salmonella enterica Serovar Typhimurium

Daniel Ryan, Urmesh K. Ojha, Sangeeta Jaiswal, Chandrashekhar Padhi, Mrutyunjay Suar

Front Microbiol. 2016; 7: 599. Published online 2016 Apr 26. doi: 10.3389/fmicb.2016.00599

PMCID:: PMC4844625

Abstract Article PDF–2.7M

Select item 480748220.

Genes Required for the Fitness of Salmonella enterica Serovar Typhimurium during Infection of Immunodeficient gp91^−/−phox Mice

Andrew J. Grant, Olusegun Oshota, Roy R. Chaudhuri, Matthew Mayho, Sarah E. Peters, Simon Clare, Duncan J. Maskell, Pietro Mastroeni

Infect Immun. 2016 Apr; 84(4): 989–997. Prepublished online 2016 Jan 19. Published online 2016 Mar 24. doi: 10.1128/IAI.01423-15

PMCID:: PMC4807482

Abstract Article PDF–1.8M

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