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Items: 1 to 20 of 68

1.
A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing
Keylie M. Gibson, Kamwing Jair, Amanda D. Castel, Matthew L. Bendall, Brittany Wilbourn, Jeanne A. Jordan, Keith A. Crandall, Marcos Pérez-Losada, the DC Cohort Executive Committee
Sci Rep. 2020; 10: 1989. Published online 2020 Feb 6. doi: 10.1038/s41598-020-58410-y
Correction in:
Sci Rep. 2020; 10: 7099.
PMCID:
PMC7004982
AbstractArticlePDF–1.6M
2.
Deep Sequencing Reveals Central Nervous System Compartmentalization in Multiple Transmitted/Founder Virus Acute HIV-1 Infection
Sodsai Tovanabutra, Rujipas Sirijatuphat, Phuc T. Pham, Lydia Bonar, Elizabeth A. Harbolick, Meera Bose, Hongshuo Song, David Chang, Celina Oropeza, Anne Marie O’Sullivan, Joyce Balinang, Eugene Kroon, Donn J. Colby, Carlo Sacdalan, Joanna Hellmuth, Phillip Chan, Peeriya Prueksakaew, Suteeraporn Pinyakorn, Linda L. Jagodzinski, Duanghathai Sutthichom, Suwanna Pattamaswin, Mark de Souza, Robert A. Gramzinski, Jerome H. Kim, Nelson L. Michael, Merlin L. Robb, Nittaya Phanuphak, Jintanat Ananworanich, Victor Valcour, Gustavo H. Kijak, Eric Sanders-Buell, Serena Spudich, The MHRP Viral Sequencing Core, the RV254/SEARCH 010 Study Team
Cells. 2019 Aug; 8(8): 902. Published online 2019 Aug 15. doi: 10.3390/cells8080902
PMCID:
PMC6721674
AbstractArticlePDF–1.3M
3.
The concordance of the limiting antigen and the Bio-Rad avidity assays in persons from Estonia infected mainly with HIV-1 CRF06_cpx
Kristi Huik, Pilleriin Soodla, Merit Pauskar, S. Michele Owen, Wei Luo, Gary Murphy, Ene-Ly Jõgeda, Eveli Kallas, Heli Rajasaar, Radko Avi, Silvina Masciotra, Irja Lutsar, for the CASCADE Collaboration in the EuroCoord
PLoS One. 2019; 14(5): e0217048. Published online 2019 May 24. doi: 10.1371/journal.pone.0217048
PMCID:
PMC6534295
AbstractArticlePDF–1.3M
4.
Retrotransposons evolution and impact on lncRNA and protein coding genes in pigs
Cai Chen, Wei Wang, Xiaoyan Wang, Dan Shen, Saisai Wang, Yali Wang, Bo Gao, Klaus Wimmers, Jiude Mao, Kui Li, Chengyi Song
Mob DNA. 2019; 10: 19. Published online 2019 May 6. doi: 10.1186/s13100-019-0161-8
PMCID:
PMC6501411
AbstractArticlePDF–7.0M
5.
Genome-wide characterization of endogenous retroviruses in snub-nosed monkeys
Xiao Wang, Boshi Wang, Zhijin Liu, Paul A. Garber, Huijuan Pan
PeerJ. 2019; 7: e6602. Published online 2019 Mar 18. doi: 10.7717/peerj.6602
PMCID:
PMC6428148
AbstractArticlePDF–2.0M
6.
Characterization of minority HIV-1 drug resistant variants in the United Kingdom following the verification of a deep sequencing-based HIV-1 genotyping and tropism assay
Nicholas Silver, Mary Paynter, Georgina McAllister, Maureen Atchley, Christine Sayir, John Short, Dane Winner, David J. Alouani, Freddie H. Sharkey, Kicki Bergefall, Kate Templeton, David Carrington, Miguel E. Quiñones-Mateu
AIDS Res Ther. 2018; 15: 18. Published online 2018 Nov 8. doi: 10.1186/s12981-018-0206-y
PMCID:
PMC6223033
AbstractArticlePDF–2.9M
7.
Higher Frequency of HIV-1 Drug Resistance and Increased Nucleoside Reverse Transcriptase Inhibitor Mutations among the HIV-1 Positive Antiretroviral Therapy–Naïve patients Coinfected With Mycobacterium tuberculosis Compared With Only HIV Infection in India
Sanjeev Sinha, Kartik Gupta, Nawaid Hussain Khan, Dibyakanti Mandal, Mikashmi Kohli, BK Das, RM Pandey
Infect Dis (Auckl) 2018; 11: 1178633718788870. Published online 2018 Jul 23. doi: 10.1177/1178633718788870
PMCID:
PMC6056791
AbstractArticlePDF–804K
8.
Combined skin and muscle vaccination differentially impact the quality of effector T cell functions: the CUTHIVAC-001 randomized trial
G. Haidari, A. Cope, A. Miller, S. Venables, C. Yan, H. Ridgers, K. Reijonen, D. Hannaman, A. Spentzou, P. Hayes, G. Bouliotis, A. Vogt, S. Joseph, B. Combadiere, S. McCormack, R. J. Shattock
Sci Rep. 2017; 7: 13011. Published online 2017 Oct 12. doi: 10.1038/s41598-017-13331-1
PMCID:
PMC5638927
AbstractArticlePDF–1.5M
9.
An information-based network approach for protein classification
Xiaogeng Wan, Xin Zhao, Stephen S. T. Yau
PLoS One. 2017; 12(3): e0174386. Published online 2017 Mar 28. doi: 10.1371/journal.pone.0174386
PMCID:
PMC5370107
AbstractArticlePDF–2.9M
10.
A Molecular Approach to Nested RT-PCR Using a New Set of Primers for the Detection of the Human Immunodeficiency Virus Protease Gene
Mohammad Zarei, Mehrdad Ravanshad, Ashraf Bagban, Shahab Fallahi
Jundishapur J Microbiol. 2016 Jul; 9(7): e30365. Published online 2016 Jul 3. doi: 10.5812/jjm.30365
PMCID:
PMC5035394
AbstractArticlePDF–422K
11.
Tracing HIV-1 transmission: envelope traits of HIV-1 transmitter and recipient pairs
Corinna S. Oberle, Beda Joos, Peter Rusert, Nottania K. Campbell, David Beauparlant, Herbert Kuster, Jacqueline Weber, Corinne D. Schenkel, Alexandra U. Scherrer, Carsten Magnus, Roger Kouyos, Philip Rieder, Barbara Niederöst, Dominique L. Braun, Jovan Pavlovic, Jürg Böni, Sabine Yerly, Thomas Klimkait, Vincent Aubert, Alexandra Trkola, Karin J. Metzner, Huldrych F. Günthard, The Swiss HIV Cohort Study (SHCS)
Retrovirology. 2016; 13(1): 62. Published online 2016 Sep 5. doi: 10.1186/s12977-016-0299-0
PMCID:
PMC5011806
AbstractArticlePDF–3.2M
12.
Broad HIV-1 inhibition in vitro by vaccine-elicited CD8+ T cells in African adults
Gaudensia Mutua, Bashir Farah, Robert Langat, Jackton Indangasi, Simon Ogola, Brian Onsembe, Jakub T Kopycinski, Peter Hayes, Nicola J Borthwick, Ambreen Ashraf, Len Dally, Burc Barin, Annika Tillander, Jill Gilmour, Jan De Bont, Alison Crook, Drew Hannaman, Josephine H Cox, Omu Anzala, Patricia E Fast, Marie Reilly, Kundai Chinyenze, Walter Jaoko, Tomáš Hanke, the HIV-CORE 004 study group
Mol Ther Methods Clin Dev. 2016; 3: 16061. Published online 2016 Aug 31. doi: 10.1038/mtm.2016.61
PMCID:
PMC5006719
AbstractArticlePDF–816K
13.
Short-term treatment outcomes in human immunodeficiency virus type-1 and hepatitis B virus co-infections
Kwamena William Coleman Sagoe, Kwabena Obeng Duedu, Francesca Ziga, Afrakoma Adjoa Agyei, Theophilus Korku Adiku, Margaret Lartey, Julius Abraham Addo Mingle, Max Arens
Ann Clin Microbiol Antimicrob. 2016; 15: 38. Published online 2016 Jun 2. doi: 10.1186/s12941-016-0152-2
PMCID:
PMC4890471
AbstractArticlePDF–809K
14.
Utility of Metagenomic Next-Generation Sequencing for Characterization of HIV and Human Pegivirus Diversity
Ka-Cheung Luk, Michael G. Berg, Samia N. Naccache, Beniwende Kabre, Scot Federman, Dora Mbanya, Lazare Kaptué, Charles Y. Chiu, Catherine A. Brennan, John Hackett, Jr
PLoS One. 2015; 10(11): e0141723. Published online 2015 Nov 23. doi: 10.1371/journal.pone.0141723
PMCID:
PMC4658132
AbstractArticlePDF–3.3M
15.
A Phase I Double Blind, Placebo-Controlled, Randomized Study of the Safety and Immunogenicity of an Adjuvanted HIV-1 Gag-Pol-Nef Fusion Protein and Adenovirus 35 Gag-RT-Int-Nef Vaccine in Healthy HIV-Uninfected African Adults
Gloria Omosa-Manyonyi, Juliet Mpendo, Eugene Ruzagira, William Kilembe, Elwyn Chomba, François Roman, Patricia Bourguignon, Marguerite Koutsoukos, Alix Collard, Gerald Voss, Dagna Laufer, Gwynn Stevens, Peter Hayes, Lorna Clark, Emmanuel Cormier, Len Dally, Burc Barin, Jim Ackland, Kristen Syvertsen, Devika Zachariah, Kamaal Anas, Eddy Sayeed, Angela Lombardo, Jill Gilmour, Josephine Cox, Patricia Fast, Frances Priddy
PLoS One. 2015; 10(5): e0125954. Published online 2015 May 11. doi: 10.1371/journal.pone.0125954
PMCID:
PMC4427332
AbstractArticlePDF–2.0M
16.
Performance of an In-House Human Immunodeficiency Virus Type 1 Genotyping System for Assessment of Drug Resistance in Cuba
Yoan Alemán, Lore Vinken, Vivian Kourí, Lissette Pérez, Alina Álvarez, Yeissel Abrahantes, Carlos Fonseca, Jorge Pérez, Consuelo Correa, Yudira Soto, Yoeri Schrooten, Anne-Mieke Vandamme, Kristel Van Laethem
PLoS One. 2015; 10(2): e0117176. Published online 2015 Feb 11. doi: 10.1371/journal.pone.0117176
PMCID:
PMC4324769
AbstractArticlePDF–223K
17.
Subtype Classification of Iranian HIV-1 Sequences Registered in the HIV Databases, 2006-2013
Kazem Baesi, Samaneh Moallemi, Molood Farrokhi, Seyed Ahmad Seyed Alinaghi, Hong–Ha M. Truong
PLoS One. 2014; 9(9): e105098. Published online 2014 Sep 4. doi: 10.1371/journal.pone.0105098
PMCID:
PMC4154867
AbstractArticlePDF–304K
18.
Association between Latent Proviral Characteristics and Immune Activation in Antiretrovirus-Treated Human Immunodeficiency Virus Type 1-Infected Adults
Emily C. Liang, Lindsay Sceats, Nicholas L. Bayless, Dara M. Strauss-Albee, Jessica Kubo, Philip M. Grant, David Furman, Manisha Desai, David A. Katzenstein, Mark M. Davis, Andrew R. Zolopa, Catherine A. Blish
J Virol. 2014 Aug; 88(15): 8629–8639. doi: 10.1128/JVI.01257-14
PMCID:
PMC4135944
AbstractArticlePDF–1.5M
19.
Short Communication: Molecular Epidemiology of HIV Type 1 Infection in Northern Greece (2009–2010): Evidence of a Transmission Cluster of HIV Type 1 Subtype A1 Drug-Resistant Strains Among Men Who Have Sex with Men
Zoi-Anna Antoniadou, Ioanna Kousiappa, Lemonia Skoura, Dimitris Pilalas, Simeon Metallidis, Pavlos Nicolaidis, Nicolaos Malisiovas, Leondios G. Kostrikis
AIDS Res Hum Retroviruses. 2014 Mar 1; 30(3): 225–232. doi: 10.1089/aid.2013.0166
PMCID:
PMC3938947
AbstractArticlePDF–198K
20.
Transmitted Drug Resistance Is Still Low in Newly Diagnosed Human Immunodeficiency Virus Type 1 CRF06_cpx-Infected Patients in Estonia in 2010
Radko Avi, Kristi Huik, Merit Pauskar, Valentina Ustina, Tõnis Karki, Eveli Kallas, Ene-Ly Jõgeda, Tõnu Krispin, Irja Lutsar
AIDS Res Hum Retroviruses. 2014 Mar 1; 30(3): 278–283. doi: 10.1089/aid.2012.0357
PMCID:
PMC3938922
AbstractArticlePDF–113K

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