PMC Links for Nucleotide (Select 47118305) - PMC

Select item 68584481.

Virus-borne mini-CRISPR arrays are involved in interviral conflicts

Sofia Medvedeva, Ying Liu, Eugene V. Koonin, Konstantin Severinov, David Prangishvili, Mart Krupovic

Nat Commun. 2019; 10: 5204. Published online 2019 Nov 15. doi: 10.1038/s41467-019-13205-2

PMCID:: PMC6858448

Abstract Article PDF–957K

Select item 67200312.

Large-scale sequence comparisons with sourmash

N. Tessa Pierce, Luiz Irber, Taylor Reiter, Phillip Brooks, C. Titus Brown

Version 1. F1000Res. 2019; 8: 1006. Published online 2019 Jul 4. doi: 10.12688/f1000research.19675.1

PMCID:: PMC6720031

Abstract Article PDF–1.5M

Select item 59810633.

Mechanisms of Mineral Substrate Acquisition in a Thermoacidophile

Maximiliano J. Amenabar, Eric S. Boyd

Appl Environ Microbiol. 2018 Jun 15; 84(12): e00334-18. Prepublished online 2018 Apr 6. Published online 2018 May 31. doi: 10.1128/AEM.00334-18

PMCID:: PMC5981063

Abstract Article PDF–1007K

Select item 51725474.

A Comprehensive Software Suite for the Analysis of cDNAs

Kazuharu Arakawa, Haruo Suzuki, Kosuke Fujishima, Kenji Fujimoto, Sho Ueda, Motomu Matsui, Masaru Tomita

Genomics Proteomics Bioinformatics. 2005; 3(3): 179–188. Published online 2016 Nov 28. doi: 10.1016/S1672-0229(05)03023-8

PMCID:: PMC5172547

Abstract Article PDF–541K

Select item 51278495.

Genome Sequencing of Sulfolobus sp. A20 from Costa Rica and Comparative Analyses of the Putative Pathways of Carbon, Nitrogen, and Sulfur Metabolism in Various Sulfolobus Strains

Xin Dai, Haina Wang, Zhenfeng Zhang, Kuan Li, Xiaoling Zhang, Marielos Mora-López, Chengying Jiang, Chang Liu, Li Wang, Yaxin Zhu, Walter Hernández-Ascencio, Zhiyang Dong, Li Huang

Front Microbiol. 2016; 7: 1902. Published online 2016 Nov 30. doi: 10.3389/fmicb.2016.01902

PMCID:: PMC5127849

Abstract Article PDF–1.6M

Select item 42676726.

Profiling small RNA reveals multimodal substructural signals in a Boltzmann ensemble

Emily Rogers, Christine E. Heitsch

Nucleic Acids Res. 2014 Dec 16; 42(22): e171. Published online 2014 Nov 11. doi: 10.1093/nar/gku959

PMCID:: PMC4267672

Abstract Article PDF–1.1M

Select item 39771327.

Structure and function of the adhesive type IV pilus of Sulfolobus acidocaldarius

Anna-Lena Henche, Abhrajyoti Ghosh, Xiong Yu, Torsten Jeske, Edward Egelman, Sonja-Verena Albers

Environ Microbiol. Author manuscript; available in PMC 2014 Apr 7.

Published in final edited form as: Environ Microbiol. 2012 Dec; 14(12): 3188–3202. Published online 2012 Oct 19. doi: 10.1111/j.1462-2920.2012.02898.x

PMCID:: PMC3977132

Abstract Article PDF–5.4M

Select item 27014938.

Fine-structured multi-scaling long-range correlations in completely sequenced genomes—features, origin, and classification

Tobias A. Knoch, Markus Göker, Rudolf Lohner, Anis Abuseiris, Frank G. Grosveld

Eur Biophys J. 2009 Jul; 38(6): 757–779. Published online 2009 Jun 17. doi: 10.1007/s00249-009-0489-y

PMCID:: PMC2701493

Abstract Article PDF–1.5M

Select item 26855859.

A putative viral defence mechanism in archaeal cells

Reidun Lillestøl, Peter Redder, Roger A. Garrett, Kim Brügger

Archaea. 2006 Aug; 2(1): 59–72. Published online 2006 Jul 10. doi: 10.1155/2006/542818

PMCID:: PMC2685585

Abstract Article PDF–1.2M

Select item 223790010.

Sequence Evidence in the Archaeal Genomes that tRNAs Emerged Through the Combination of Ancestral Genes as 5′ and 3′ tRNA Halves

Kosuke Fujishima, Junichi Sugahara, Masaru Tomita, Akio Kanai

PLoS One. 2008; 3(2): e1622. Published online 2008 Feb 20. doi: 10.1371/journal.pone.0001622

PMCID:: PMC2237900

Abstract Article PDF–541K

Select item 222261611.

Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea

Kira S Makarova, Alexander V Sorokin, Pavel S Novichkov, Yuri I Wolf, Eugene V Koonin

Biol Direct. 2007; 2: 33. Published online 2007 Nov 27. doi: 10.1186/1745-6150-2-33

PMCID:: PMC2222616

Abstract Article PDF–593K

Select item 192486712.

CRISPR Recognition Tool (CRT): a tool for automatic detection of clustered regularly interspaced palindromic repeats

Charles Bland, Teresa L Ramsey, Fareedah Sabree, Micheal Lowe, Kyndall Brown, Nikos C Kyrpides, Philip Hugenholtz

BMC Bioinformatics. 2007; 8: 209. Published online 2007 Jun 18. doi: 10.1186/1471-2105-8-209

PMCID:: PMC1924867

Abstract Article PDF–291K

Select item 185197913.

A Tale of Two Oxidation States: Bacterial Colonization of Arsenic-Rich Environments

Daniel Muller, Claudine Médigue, Sandrine Koechler, Valérie Barbe, Mohamed Barakat, Emmanuel Talla, Violaine Bonnefoy, Evelyne Krin, Florence Arsène-Ploetze, Christine Carapito, Michael Chandler, Benoît Cournoyer, Stéphane Cruveiller, Caroline Dossat, Simon Duval, Michael Heymann, Emmanuelle Leize, Aurélie Lieutaud, Didier Lièvremont, Yuko Makita, Sophie Mangenot, Wolfgang Nitschke, Philippe Ortet, Nicolas Perdrial, Barbara Schoepp, Patricia Siguier, Diliana D Simeonova, Zoé Rouy, Béatrice Segurens, Evelyne Turlin, David Vallenet, Alain Van Dorsselaer, Stéphanie Weiss, Jean Weissenbach, Marie-Claire Lett, Antoine Danchin, Philippe N Bertin

PLoS Genet. 2007 Apr; 3(4): e53. Prepublished online 2007 Mar 5. Published online 2007 Apr 13. doi: 10.1371/journal.pgen.0030053

PMCID:: PMC1851979

Abstract Article PDF–763K

Select item 157430914.

Analysis of Nanoarchaeum equitans genome and proteome composition: indications for hyperthermophilic and parasitic adaptation

Sabyasachi Das, Sandip Paul, Sumit K Bag, Chitra Dutta

BMC Genomics. 2006; 7: 186. Published online 2006 Jul 25. doi: 10.1186/1471-2164-7-186

PMCID:: PMC1574309

Abstract Article PDF–647K

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