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Links from Nucleotide

Items: 17

1.
Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes
Blanca Taboada, Karel Estrada, Ricardo Ciria, Enrique Merino
Bioinformatics. 2018 Dec 1; 34(23): 4118–4120. Published online 2018 Jun 19. doi: 10.1093/bioinformatics/bty496
PMCID:
PMC6247939
AbstractArticlePDF–80K
2.
The Pelagic Bacterium Paraphotobacterium marinum Has the Smallest Complete Genome Within the Family Vibrionaceae
Zhaobin Huang, Zhen Liu, Zongze Shao
Front Microbiol. 2017; 8: 1994. Published online 2017 Oct 11. doi: 10.3389/fmicb.2017.01994
PMCID:
PMC5649133
AbstractArticlePDF–2.1M
3.
Optimization and Characterization of the Synthetic Secondary Chromosome synVicII in Escherichia coli
Sonja J. Messerschmidt, Daniel Schindler, Celine M. Zumkeller, Franziska S. Kemter, Nadine Schallopp, Torsten Waldminghaus
Front Bioeng Biotechnol. 2016; 4: 96. Published online 2016 Dec 23. doi: 10.3389/fbioe.2016.00096
PMCID:
PMC5179572
AbstractArticlePDF–2.7M
4.
Rare Events of Intragenus and Intraspecies Horizontal Transfer of the 16S rRNA Gene
Ren-Mao Tian, Lin Cai, Wei-Peng Zhang, Hui-Luo Cao, Pei-Yuan Qian
Genome Biol Evol. 2015 Aug; 7(8): 2310–2320. Published online 2015 Jul 27. doi: 10.1093/gbe/evv143
PMCID:
PMC4558861
AbstractArticlePDF–776K
5.
Characterization of single-stranded DNA-binding proteins from the psychrophilic bacteria Desulfotalea psychrophila, Flavobacterium psychrophilum, Psychrobacter arcticus, Psychrobacter cryohalolentis, Psychromonas ingrahamii, Psychroflexus torquis, and Photobacterium profundum
Marta Nowak, Marcin Olszewski, Marta Śpibida, Józef Kur
BMC Microbiol. 2014; 14: 91. Published online 2014 Apr 14. doi: 10.1186/1471-2180-14-91
PMCID:
PMC3991886
AbstractArticlePDF–2.9M
6.
Genome Sequence of Luminous Piezophile Photobacterium phosphoreum ANT-2200
Sheng-Da Zhang, Valérie Barbe, Marc Garel, Wei-Jia Zhang, Haitao Chen, Claire-Lise Santini, Dorothée Murat, Hongmei Jing, Yuan Zhao, Aurélie Lajus, Séverine Martini, Nathalie Pradel, Christian Tamburini, Long-Fei Wu
Genome Announc. 2014 Mar-Apr; 2(2): e00096-14. Published online 2014 Apr 17. doi: 10.1128/genomeA.00096-14
PMCID:
PMC3990738
AbstractArticlePDF–139K
7.
Genome-level homology and phylogeny of Vibrionaceae (Gammaproteobacteria: Vibrionales) with three new complete genome sequences
Rebecca B Dikow, William Leo Smith
BMC Microbiol. 2013; 13: 80. Published online 2013 Apr 11. doi: 10.1186/1471-2180-13-80
PMCID:
PMC3663674
AbstractArticlePDF–3.2M
8.
Comparative Genomics of CytR, an Unusual Member of the LacI Family of Transcription Factors
Natalia V. Sernova, Mikhail S. Gelfand
PLoS One. 2012; 7(9): e44194. Published online 2012 Sep 24. doi: 10.1371/journal.pone.0044194
PMCID:
PMC3454398
AbstractArticlePDF–3.6M
9.
Single-stranded DNA transposition is coupled to host replication
Bao Ton Hoang, Cécile Pasternak, Patricia Siguier, Catherine Guynet, Alison Burgess Hickman, Fred Dyda, Suzanne Sommer, Michael Chandler
Cell. Author manuscript; available in PMC 2011 Aug 6.
Published in final edited form as: Cell. 2010 Aug 6; 142(3): 398–408. doi: 10.1016/j.cell.2010.06.034
PMCID:
PMC2919506
AbstractArticlePDF–1.9M
10.
Comparative genomics of the family Vibrionaceae reveals the wide distribution of genes encoding virulence-associated proteins
Timothy G Lilburn, Jianying Gu, Hong Cai, Yufeng Wang
BMC Genomics. 2010; 11: 369. Published online 2010 Jun 10. doi: 10.1186/1471-2164-11-369
PMCID:
PMC2890568
AbstractArticlePDF–1.4M
11.
Genomic and systems evolution in Vibrionaceae species
Jianying Gu, Jennifer Neary, Hong Cai, Audrey Moshfeghian, Stephen A Rodriguez, Timothy G Lilburn, Yufeng Wang
BMC Genomics. 2009; 10(Suppl 1): S11. Published online 2009 Jul 7. doi: 10.1186/1471-2164-10-S1-S11
PMCID:
PMC2709254
AbstractArticlePDF–359K
12.
Protein evolution in deep sea bacteria: an analysis of amino acids substitution rates
Stefano Campanaro, Laura Treu, Giorgio Valle
BMC Evol Biol. 2008; 8: 313. Published online 2008 Nov 13. doi: 10.1186/1471-2148-8-313
PMCID:
PMC2600651
AbstractArticlePDF–1.6M
13.
Lack of genomic evidence of AI-2 receptors suggests a non-quorum sensing role for luxS in most bacteria
Fabio Rezzonico, Brion Duffy
BMC Microbiol. 2008; 8: 154. Published online 2008 Sep 20. doi: 10.1186/1471-2180-8-154
PMCID:
PMC2561040
AbstractArticlePDF–532K
14.
Impact of Transcription Units rearrangement on the evolution of the regulatory network of gamma-proteobacteria
Abel D González Pérez, Evelyn González González, Vladimir Espinosa Angarica, Ana Tereza R Vasconcelos, Julio Collado-Vides
BMC Genomics. 2008; 9: 128. Published online 2008 Mar 17. doi: 10.1186/1471-2164-9-128
PMCID:
PMC2329645
AbstractArticlePDF–936K
15.
Evolution of ribonuclease H genes in prokaryotes to avoid inheritance of redundant genes
Hiromi Kochiwa, Masaru Tomita, Akio Kanai
BMC Evol Biol. 2007; 7: 128. Published online 2007 Jul 31. doi: 10.1186/1471-2148-7-128
PMCID:
PMC1950709
AbstractArticlePDF–591K
16.
Molecular Evolution of the H-NS Protein: Interaction with Hha-Like Proteins Is Restricted to Enterobacteriaceae
Cristina Madrid, Jesús García, Miquel Pons, Antonio Juárez
J Bacteriol. 2007 Jan; 189(1): 265–268. Published online 2006 Oct 13. doi: 10.1128/JB.01124-06
PMCID:
PMC1797219
AbstractArticlePDF–317K
17.
Tractor_DB (version 2.0): a database of regulatory interactions in gamma-proteobacterial genomes
Abel González Pérez, Vladimir Espinosa Angarica, Ana Tereza R. Vasconcelos, Julio Collado-Vides
Nucleic Acids Res. 2007 Jan; 35(Database issue): D132–D136. Published online 2006 Nov 6. doi: 10.1093/nar/gkl800
PMCID:
PMC1669740
AbstractArticlePDF–231K

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