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Items: 10

1.
RNase E cleavage shapes the transcriptome of Rhodobacter sphaeroides and strongly impacts phototrophic growth
Konrad U Förstner, Carina M Reuscher, Kerstin Haberzettl, Lennart Weber, Gabriele Klug
Life Sci Alliance. 2018 Aug; 1(4): e201800080. Published online 2018 Aug 1. doi: 10.26508/lsa.201800080
PMCID:
PMC6238624
AbstractArticlePDF–1.7M
2.
6S RNA in Rhodobacter sphaeroides: 6S RNA and pRNA transcript levels peak in late exponential phase and gene deletion causes a high salt stress phenotype
Daria Elkina, Lennart Weber, Marcus Lechner, Olga Burenina, Andrea Weisert, Elena Kubareva, Roland K. Hartmann, Gabriele Klug
RNA Biol. 2017; 14(11): 1627–1637. Published online 2017 Sep 13. doi: 10.1080/15476286.2017.1342933
Correction in:
RNA Biol. 2018; 15(1): 156.
PMCID:
PMC5785217
AbstractArticlePDF–863K
3.
An RpoHI-Dependent Response Promotes Outgrowth after Extended Stationary Phase in the Alphaproteobacterium Rhodobacter sphaeroides
B. Remes, T. Rische-Grahl, K. M. H. Müller, K. U. Förstner, Sung-Huan Yu, L. Weber, A. Jäger, V. Peuser, G. Klug
J Bacteriol. 2017 Jul 15; 199(14): e00249-17. Prepublished online 2017 May 15. Published online 2017 Jun 27. doi: 10.1128/JB.00249-17
PMCID:
PMC5494747
AbstractArticlePDF–1.4M
4.
HGA: denovo genome assembly method for bacterial genomes using high coverage short sequencing reads
Anas A. Al-okaily
BMC Genomics. 2016; 17: 193. Published online 2016 Mar 5. doi: 10.1186/s12864-016-2515-7
PMCID:
PMC4779561
AbstractArticlePDF–1.6M
5.
NxRepair: error correction in de novo sequence assembly using Nextera mate pairs
Rebecca R. Murphy, Jared O’Connell, Anthony J. Cox, Ole Schulz-Trieglaff
PeerJ. 2015; 3: e996. Published online 2015 Jun 2. doi: 10.7717/peerj.996
PMCID:
PMC4458127
AbstractArticlePDF–1.1M
6.
Completing bacterial genome assemblies: strategy and performance comparisons
Yu-Chieh Liao, Shu-Hung Lin, Hsin-Hung Lin
Sci Rep. 2015; 5: 8747. Published online 2015 Mar 4. doi: 10.1038/srep08747
PMCID:
PMC4348652
AbstractArticlePDF–519K
7.
GAGE-B: an evaluation of genome assemblers for bacterial organisms
Tanja Magoc, Stephan Pabinger, Stefan Canzar, Xinyue Liu, Qi Su, Daniela Puiu, Luke J. Tallon, Steven L. Salzberg
Bioinformatics. 2013 Jul 15; 29(14): 1718–1725. Published online 2013 May 10. doi: 10.1093/bioinformatics/btt273
PMCID:
PMC3702249
AbstractArticlePDF–283K
8.
Efficient and robust RNA-seq process for cultured bacteria and complex community transcriptomes
Georgia Giannoukos, Dawn M Ciulla, Katherine Huang, Brian J Haas, Jacques Izard, Joshua Z Levin, Jonathan Livny, Ashlee M Earl, Dirk Gevers, Doyle V Ward, Chad Nusbaum, Bruce W Birren, Andreas Gnirke
Genome Biol. 2012; 13(3): r23. Published online 2012 Mar 28. doi: 10.1186/gb-2012-13-3-r23
PMCID:
PMC3439974
AbstractArticlePDF–1.0M
9.
Distribution of Genes Encoding Nucleoid-Associated Protein Homologs in Plasmids
Toshiharu Takeda, Choong-Soo Yun, Masaki Shintani, Hisakazu Yamane, Hideaki Nojiri
Int J Evol Biol. 2011; 2011: 685015. Published online 2011 Jan 24. doi: 10.4061/2011/685015
PMCID:
PMC3042613
AbstractArticlePDF–683K
10.
Genome Analyses of Three Strains of Rhodobacter sphaeroides: Evidence of Rapid Evolution of Chromosome II
M. Choudhary, Xie Zanhua, Y. X. Fu, S. Kaplan
J Bacteriol. 2007 Mar; 189(5): 1914–1921. Published online 2006 Dec 15. doi: 10.1128/JB.01498-06
PMCID:
PMC1855717
AbstractArticlePDF–436K

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